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热休克蛋白 70 PCR-RFLP:新世界和旧世界利什曼原虫种属鉴别通用简单工具。

Heat-shock protein 70 PCR-RFLP: a universal simple tool for Leishmania species discrimination in the New and Old World.

机构信息

Instituto de Medicina Tropical Pedro Kourí, Departamento de Parasitología, La Habana, Cuba.

出版信息

Parasitology. 2010 Jul;137(8):1159-68. doi: 10.1017/S0031182010000089. Epub 2010 May 5.


DOI:10.1017/S0031182010000089
PMID:20441679
Abstract

INTRODUCTION: Species typing in leishmaniasis gains importance in diagnostics, epidemiology, and clinical studies. A restriction fragment length polymorphism (RFLP) assay of PCR amplicons from a partial heat-shock protein 70 gene (hsp70) had been described for the New World, allowing identification of some species. METHODS: Based on an initial in silico analysis of 51 hsp70 sequences, most of which we recently determined in the frame of a phylogenetic study, species-specific restriction sites were identified. These were tested by PCR-RFLP on 139 strains from 14 species, thereby documenting both inter- and intra-species variability. RESULTS: Our assay could identify Leishmania infantum, L. donovani, L. tropica, L. aethiopica, L. major, L. lainsoni, L. naiffi, L. braziliensis, L. peruviana, L. guyanensis, and L. panamensis by applying 2 subsequent digests. L. mexicana, L. amazonensis, and L. garnhami did not generate species-specific restriction fragment patterns. CONCLUSION: Currently no assay is available for global Leishmania species discrimination. We present a universal PCR-RFLP method allowing identification of most medically relevant Old and New World Leishmania species on the basis of a single PCR, obviating the need to perform separate PCRs. The technique is simple to perform and can be implemented in all settings where PCR is available.

摘要

简介:利什曼病的物种分型在诊断、流行病学和临床研究中变得越来越重要。一种基于聚合酶链反应(PCR)扩增子的部分热休克蛋白 70 基因(hsp70)的限制性片段长度多态性(RFLP)分析方法已被用于新大陆,可以鉴定一些物种。

方法:基于我们最近在一项系统发育研究框架内确定的 51 个 hsp70 序列的初步计算机分析,确定了物种特异性的限制性位点。通过对来自 14 个物种的 139 株菌株进行 PCR-RFLP 测试,验证了种内和种间的变异性。

结果:我们的检测方法可以通过进行两次后续消化来鉴定出利什曼原虫、L. donovani、L. tropica、L. aethiopica、L. major、L. lainsoni、L. naiffi、L. braziliensis、L. peruviana、L. guyanensis 和 L. panamensis。L. mexicana、L. amazonensis 和 L. garnhami 没有产生物种特异性的限制性片段模式。

结论:目前没有用于全球利什曼物种鉴别检测的方法。我们提出了一种通用的 PCR-RFLP 方法,可以基于单个 PCR 鉴定出大多数与医学相关的旧大陆和新大陆利什曼原虫物种,避免了进行单独 PCR 的需要。该技术操作简单,可在所有可进行 PCR 的环境中实施。

相似文献

[1]
Heat-shock protein 70 PCR-RFLP: a universal simple tool for Leishmania species discrimination in the New and Old World.

Parasitology. 2010-5-5

[2]
Phylogeny of Leishmania species based on the heat-shock protein 70 gene.

Infect Genet Evol. 2009-11-11

[3]
[PCR-RFLP and RAPD for typing neotropical Leishmania].

Biomedica. 2008-12

[4]
Differentiation of Leishmania (Viannia) panamensis and Leishmania (V.) guyanensis using BccI for hsp70 PCR-RFLP.

Trans R Soc Trop Med Hyg. 2010-3-15

[5]
Accurate and rapid species typing from cutaneous and mucocutaneous leishmaniasis lesions of the New World.

Diagn Microbiol Infect Dis. 2012-7-21

[6]
Identification of Old World Leishmania species by PCR-RFLP of the 7 spliced leader RNA gene and reverse dot blot assay.

Trop Med Int Health. 2010-6-15

[7]
Leishmania spp. identification by polymerase chain reaction-restriction fragment length polymorphism analysis and its applications in French Guiana.

Diagn Microbiol Infect Dis. 2009-9-25

[8]
Sequence analysis and PCR-RFLP profiling of the hsp70 gene as a valuable tool for identifying Leishmania species associated with human leishmaniasis in Brazil.

Infect Genet Evol. 2009-11-11

[9]
Rapid diagnosis and genotyping of Leishmania isolates from cutaneous and visceral leishmaniasis by microcapillary cultivation and polymerase chain reaction-restriction fragment length polymorphism of miniexon region.

Diagn Microbiol Infect Dis. 2005-11

[10]
Detection and identification of Leishmania spp.: application of two hsp70-based PCR-RFLP protocols to clinical samples from the New World.

Parasitol Res. 2017-7

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Microorganisms. 2024-9-26

[2]
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Parasitol Res. 2024-7-3

[3]
Cutaneous and Visceral Leishmaniasis Caused by the Same Zymodeme of Leishmania donovani in Kerala, India.

Am J Trop Med Hyg. 2023-12-18

[4]
Detection of Internal Transcribed Spacer 1 and hsp70 Genetic Markers Using Restriction Fragment Length Polymorphisms and Sequencing in Identification of Leishmania Species Causing Tegumentary Leishmaniasis in Brazil.

Am J Trop Med Hyg. 2024-1-3

[5]
Characterization of Parasites Isolated from Naturally Infected Mammals.

Animals (Basel). 2023-6-29

[6]
Low genetic heterogeneity of Leishmania major in different geographical regions of Iran.

PLoS One. 2023

[7]
Raising the suspicion of a non-autochthonous infection: identification of Leishmania guyanensis from Costa Rica exhibits a Leishmaniavirus related to Brazilian north-east and French Guiana viral genotypes.

Mem Inst Oswaldo Cruz. 2023

[8]
Applications of MALDI-TOF Mass Spectrometry to the Identification of Parasites and Arthropod Vectors of Human Diseases.

Microorganisms. 2022-11-20

[9]
Laboratory diagnostics for human Leishmania infections: a polymerase chain reaction-focussed review of detection and identification methods.

Parasit Vectors. 2022-11-5

[10]
Characterization of spp. Causing Cutaneous Lesions with a Negative Parasitological Diagnosis in Panama.

Trop Med Infect Dis. 2022-10-3

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