Instituto de Medicina Tropical Pedro Kourí, Departamento de Parasitología, La Habana, Cuba.
Parasitology. 2010 Jul;137(8):1159-68. doi: 10.1017/S0031182010000089. Epub 2010 May 5.
INTRODUCTION: Species typing in leishmaniasis gains importance in diagnostics, epidemiology, and clinical studies. A restriction fragment length polymorphism (RFLP) assay of PCR amplicons from a partial heat-shock protein 70 gene (hsp70) had been described for the New World, allowing identification of some species. METHODS: Based on an initial in silico analysis of 51 hsp70 sequences, most of which we recently determined in the frame of a phylogenetic study, species-specific restriction sites were identified. These were tested by PCR-RFLP on 139 strains from 14 species, thereby documenting both inter- and intra-species variability. RESULTS: Our assay could identify Leishmania infantum, L. donovani, L. tropica, L. aethiopica, L. major, L. lainsoni, L. naiffi, L. braziliensis, L. peruviana, L. guyanensis, and L. panamensis by applying 2 subsequent digests. L. mexicana, L. amazonensis, and L. garnhami did not generate species-specific restriction fragment patterns. CONCLUSION: Currently no assay is available for global Leishmania species discrimination. We present a universal PCR-RFLP method allowing identification of most medically relevant Old and New World Leishmania species on the basis of a single PCR, obviating the need to perform separate PCRs. The technique is simple to perform and can be implemented in all settings where PCR is available.
简介:利什曼病的物种分型在诊断、流行病学和临床研究中变得越来越重要。一种基于聚合酶链反应(PCR)扩增子的部分热休克蛋白 70 基因(hsp70)的限制性片段长度多态性(RFLP)分析方法已被用于新大陆,可以鉴定一些物种。
方法:基于我们最近在一项系统发育研究框架内确定的 51 个 hsp70 序列的初步计算机分析,确定了物种特异性的限制性位点。通过对来自 14 个物种的 139 株菌株进行 PCR-RFLP 测试,验证了种内和种间的变异性。
结果:我们的检测方法可以通过进行两次后续消化来鉴定出利什曼原虫、L. donovani、L. tropica、L. aethiopica、L. major、L. lainsoni、L. naiffi、L. braziliensis、L. peruviana、L. guyanensis 和 L. panamensis。L. mexicana、L. amazonensis 和 L. garnhami 没有产生物种特异性的限制性片段模式。
结论:目前没有用于全球利什曼物种鉴别检测的方法。我们提出了一种通用的 PCR-RFLP 方法,可以基于单个 PCR 鉴定出大多数与医学相关的旧大陆和新大陆利什曼原虫物种,避免了进行单独 PCR 的需要。该技术操作简单,可在所有可进行 PCR 的环境中实施。
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