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应用聚合酶链反应-限制性片段长度多态性分析 7 拼接小核 RNA 基因和反向斑点杂交试验鉴定旧世界利什曼原虫种。

Identification of Old World Leishmania species by PCR-RFLP of the 7 spliced leader RNA gene and reverse dot blot assay.

机构信息

Al-Quds Nutrition and Health Research Institute, Faculty of Medicine, Al-Quds University, Abu-Deis, West Bank, Palestine.

出版信息

Trop Med Int Health. 2010 Aug;15(8):872-80. doi: 10.1111/j.1365-3156.2010.02551.x. Epub 2010 Jun 15.


DOI:10.1111/j.1365-3156.2010.02551.x
PMID:20561310
Abstract

The aim of the study was to assess the 7SL RNA PCR followed by restriction fragment length polymorphism (RFLP) and reverse dot blot (RDB) assays for use in identification of Old World Leishmania species. Species-specific RFLP patterns were obtained for Leishmania major, Leishmania tropica and the Leishmania donovani complex when the 7SL RNA PCR product was digested with the restriction enzyme BsuRI, an isoschizomer of HaeIII. For the RDB assay, biotin-labelled 7SL RNA amplicons were hybridized to Leishmania genus-specific and species-specific oligonucleotide probes immobilized onto a membrane. The Old World Leishmania species could be distinguished by using five probes: one that was a genus-specific probe and hybridized to all Leishmania species (Lc), two that were specific for L. major (Lm1 and Lm2), one that was specific for L. tropica (Lt) and one that detected both L. major and L. tropica (Lmt). The PCR-RDB was 10 times more sensitive than 7SL PCR and can detect <1 parasite. In addition, the identification of species was easier and more reliable than with 7SL PCR-RFLP. 7SL PCR-RFLP detected parasites in 50 of 57 clinical samples, whereas PCR-RDB detected 53 and 55 were detected by amplification of kinetoplast (k) DNA. The 7SL RNA PCR has proven useful for direct diagnosis of Old World leishmaniasis, especially when combined with the RBD assay for species identification.

摘要

本研究旨在评估 7SL RNA PCR 联合限制性片段长度多态性(RFLP)和反向点杂交(RDB)检测法在鉴定旧世界利什曼原虫种中的应用。当 7SL RNA PCR 产物用 HaeIII 的同裂酶 BsuRI 消化时,可获得利什曼原虫属特异性 RFLP 模式,用于鉴定利什曼原虫属、利什曼原虫热带亚种和利什曼原虫杜氏利什曼原虫复合体。对于 RDB 检测法,生物素标记的 7SL RNA 扩增子与固定在膜上的利什曼原虫属特异性和种特异性寡核苷酸探针杂交。通过使用五个探针,可以区分旧世界利什曼原虫种:一个属特异性探针,与所有利什曼原虫种杂交(Lc),两个针对利什曼原虫热带亚种的特异性探针(Lm1 和 Lm2),一个针对利什曼原虫热带亚种的特异性探针(Lt)和一个检测到利什曼原虫热带亚种和利什曼原虫热带亚种的探针(Lmt)。PCR-RDB 比 7SL PCR 灵敏 10 倍,可检测到 <1 个寄生虫。此外,与 7SL PCR-RFLP 相比,种属鉴定更容易、更可靠。7SL PCR-RFLP 在 57 份临床样本中的 50 份中检测到寄生虫,而 PCR-RDB 则检测到 53 份和 55 份,通过扩增动基体(k)DNA 检测到。7SL RNA PCR 已被证明可用于旧世界利什曼病的直接诊断,尤其是与 RBD 检测法结合用于种属鉴定时。

相似文献

[1]
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[2]
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Sci Rep. 2022-6-24

[3]
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[4]
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PLoS Negl Trop Dis. 2020-10-5

[5]
Development of assays using hexokinase and phosphoglucomutase gene sequences that distinguish strains of Leishmania tropica from different zymodemes and microsatellite clusters and their application to Palestinian foci of cutaneous leishmaniasis.

PLoS Negl Trop Dis. 2013-9-26

[6]
The use of fluorescent fragment length analysis (PCR-FFL) in the direct diagnosis and identification of cutaneous Leishmania species.

Am J Trop Med Hyg. 2013-2-4

[7]
Genetic, serological and biochemical characterization of Leishmania tropica from foci in northern Palestine and discovery of zymodeme MON-307.

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[8]
Prevalence of canine leishmaniasis in Beichuan County, Sichuan, China and phylogenetic evidence for an undescribed Leishmania sp. in China based on 7SL RNA.

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