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Modeling temperature dependent kinetic isotope effects for hydrogen transfer in a series of soybean lipoxygenase mutants: The effect of anharmonicity upon transfer distance.模拟一系列大豆脂氧合酶突变体中氢转移的温度依赖性动力学同位素效应:非谐性对转移距离的影响。
Chem Phys. 2005 Dec 7;319(1-3):283-296. doi: 10.1016/j.chemphys.2005.05.017.
2
Activity of yeast alcohol dehydrogenases on benzyl alcohols and benzaldehydes: characterization of ADH1 from Saccharomyces carlsbergensis and transition state analysis.酵母醇脱氢酶对苄醇和苯甲醛的活性:嘉士伯酵母ADH1的特性及过渡态分析
Chem Biol Interact. 2009 Mar 16;178(1-3):16-23. doi: 10.1016/j.cbi.2008.10.037. Epub 2008 Nov 5.
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Deep tunneling dominates the biologically important hydride transfer reaction from NADH to FMN in morphinone reductase.在吗啡酮还原酶中,深度隧道效应主导了从NADH到FMN这一具有生物学重要性的氢化物转移反应。
J Am Chem Soc. 2008 Jun 4;130(22):7092-7. doi: 10.1021/ja800471f. Epub 2008 May 10.
4
Experimental evidence for enzyme-enhanced coupled motion/quantum mechanical hydrogen tunneling by ketosteroid isomerase.酮甾类异构酶催化的酶促增强耦合运动/量子力学氢隧穿的实验证据。
J Am Chem Soc. 2008 May 21;130(20):6577-85. doi: 10.1021/ja0732330. Epub 2008 Apr 22.
5
H and other transfers in enzymes and in solution: theory and computations, a unified view. 2. Applications to experiment and computations.酶及溶液中的氢和其他转移:理论与计算,统一观点。2. 在实验与计算中的应用。
J Phys Chem B. 2007 Jun 21;111(24):6643-54. doi: 10.1021/jp071589s. Epub 2007 May 12.
6
Alpha-secondary isotope effects as probes of "tunneling-ready" configurations in enzymatic H-tunneling: insight from environmentally coupled tunneling models.α-二级同位素效应作为酶促氢隧穿中“隧穿就绪”构型的探针:来自环境耦合隧穿模型的见解
J Am Chem Soc. 2006 Nov 1;128(43):14053-8. doi: 10.1021/ja0614619.
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Electrostatic basis for enzyme catalysis.酶催化的静电基础。
Chem Rev. 2006 Aug;106(8):3210-35. doi: 10.1021/cr0503106.
8
Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.酶促反应的多维隧穿、再穿越与透射系数
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Tunneling and dynamics in enzymatic hydride transfer.酶促氢化物转移中的隧穿与动力学
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10
Linking protein structure and dynamics to catalysis: the role of hydrogen tunnelling.将蛋白质结构与动力学与催化作用相联系:氢隧穿的作用。
Philos Trans R Soc Lond B Biol Sci. 2006 Aug 29;361(1472):1323-31. doi: 10.1098/rstb.2006.1870.

乙醇脱氢酶难以捉摸的过渡态被揭示。

Elusive transition state of alcohol dehydrogenase unveiled.

作者信息

Roston Daniel, Kohen Amnon

机构信息

Department of Chemistry, University of Iowa, Iowa City, IA 52242, USA.

出版信息

Proc Natl Acad Sci U S A. 2010 May 25;107(21):9572-7. doi: 10.1073/pnas.1000931107. Epub 2010 May 10.

DOI:10.1073/pnas.1000931107
PMID:20457944
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2906880/
Abstract

For several decades the hydride transfer catalyzed by alcohol dehydrogenase has been difficult to understand. Here we add to the large corpus of anomalous and paradoxical data collected for this reaction by measuring a normal (> 1) 2 degrees kinetic isotope effect (KIE) for the reduction of benzaldehyde. Because the relevant equilibrium effect is inverse (< 1), this KIE eludes the traditional interpretation of 2 degrees KIEs. It does, however, enable the development of a comprehensive model for the "tunneling ready state" (TRS) of the reaction that fits into the general scheme of Marcus-like models of hydrogen tunneling. The TRS is the ensemble of states along the intricate reorganization coordinate, where H tunneling between the donor and acceptor occurs (the crossing point in Marcus theory). It is comparable to the effective transition state implied by ensemble-averaged variational transition state theory. Properties of the TRS are approximated as an average of the individual properties of the donor and acceptor states. The model is consistent with experimental findings that previously appeared contradictory; specifically, it resolves the long-standing ambiguity regarding the location of the TRS (aldehyde-like vs. alcohol-like). The new picture of the TRS for this reaction identifies the principal components of the collective reaction coordinate and the average structure of the saddle point along that coordinate.

摘要

几十年来,由醇脱氢酶催化的氢化物转移一直难以理解。在这里,我们通过测量苯甲醛还原反应的正常(>1)二级动力学同位素效应(KIE),为该反应收集的大量异常和矛盾的数据增添了新内容。由于相关的平衡效应是相反的(<1),这种KIE避开了对二级KIE的传统解释。然而,它确实能够为反应的“隧穿就绪态”(TRS)建立一个综合模型,该模型符合类似马库斯氢隧穿模型的总体框架。TRS是沿着复杂的重组坐标的一系列状态,供体和受体之间的氢隧穿在此发生(马库斯理论中的交叉点)。它类似于系综平均变分过渡态理论所暗示的有效过渡态。TRS的性质近似为供体和受体状态的各个性质的平均值。该模型与先前看似矛盾的实验结果一致;具体而言,它解决了关于TRS位置(醛类与醇类)的长期模糊性。该反应的TRS的新图景确定了集体反应坐标的主要成分以及沿该坐标的鞍点的平均结构。