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模拟一系列大豆脂氧合酶突变体中氢转移的温度依赖性动力学同位素效应:非谐性对转移距离的影响。

Modeling temperature dependent kinetic isotope effects for hydrogen transfer in a series of soybean lipoxygenase mutants: The effect of anharmonicity upon transfer distance.

作者信息

Meyer Matthew P, Klinman Judith P

机构信息

Department of Chemistry and Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.

出版信息

Chem Phys. 2005 Dec 7;319(1-3):283-296. doi: 10.1016/j.chemphys.2005.05.017.

Abstract

Soybean lipoxygenase-1 (SLO) catalyzes the oxidation of linoleic acid. The rate-limiting step in this transformation is the net abstraction of the pro-S hydrogen atom from the center of the 1,5-pentadienyl moiety in linoleic acid. The large deuterium kinetic isotope effect (KIE) for this step appears in the first order rate constant ((D)k(cat) = 81 ± 5 at T = 25 °C). Furthermore, the KIE and the rate for protium abstraction are weakly temperature dependent (E(A,D) - E(A,H) = 0.9 ± 0.2 kcal/mol and E(A,H) = 2.1 ± 0.2 kcal/mol, respectively). Mutations at a hydrophobic site about 13 Å from the active site Fe(III), Ile(553), induce a marked temperature dependence that varies roughly in accordance with the degree to which the residue is changed in bulk from the wild type Ile. While the temperature dependence for these mutants varies from the wild type enzyme, the magnitude of the KIE at 25 °C is on the same order of magnitude. A hydrogen tunneling model [Kuznetsov, A.M., Ulstrup, J. Can. J. Chem. 77 (1999) 1085-1096] is utilized to model the KIE temperature profiles for the wild type SLO and each Ile(553) mutant. Hydrogenic wavefunctions are modeled using harmonic oscillators and Morse oscillators in order to explore the effects of anharmonicity upon computed kinetic observables used to characterize this hydrogen transfer.

摘要

大豆脂氧合酶-1(SLO)催化亚油酸的氧化。该转化过程中的限速步骤是从亚油酸1,5-戊二烯基部分中心净提取前-S氢原子。此步骤的大氘动力学同位素效应(KIE)出现在一级速率常数中(在T = 25°C时,(D)k(cat) = 81 ± 5)。此外,KIE和氢提取速率对温度的依赖性较弱(E(A,D) - E(A,H) = 0.9 ± 0.2 kcal/mol和E(A,H) = 2.1 ± 0.2 kcal/mol)。在距活性位点Fe(III)约13 Å的疏水位点Ile(553)处发生的突变,会引起明显的温度依赖性,其变化大致与该残基相对于野生型Ile在体积上的变化程度一致。虽然这些突变体的温度依赖性与野生型酶不同,但在25°C时KIE的大小处于同一数量级。利用氢隧穿模型[Kuznetsov, A.M., Ulstrup, J. Can. J. Chem. 77 (1999) 1085 - 1096]对野生型SLO和每个Ile(553)突变体的KIE温度分布进行建模。使用谐振子和莫尔斯振子对氢波函数进行建模,以探究非谐性对用于表征此氢转移的计算动力学可观测量的影响。

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