Department of Chemistry, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026, USA.
Org Biomol Chem. 2023 Jun 21;21(24):5090-5097. doi: 10.1039/d3ob00718a.
Recently observed nearly temperature ()-independent kinetic isotope effects (KIEs) in wild-type enzymes and -dependent KIEs in variants were used to suggest that H-tunneling in enzymes is assisted by the fast protein vibrations that help sample short donor-acceptor distances (DADs). This supports the recently proposed role of protein vibrations in DAD sampling catalysis. However, use of -dependence of KIEs to suggest DAD sampling associated with protein vibrations is debated. We have formulated a hypothesis regarding the correlation and designed experiments in solution to investigate it. The hypothesis is, a more rigid system with shorter DAD's at the tunneling ready states (TRSs) gives rise to a weaker -dependence of KIEs, , a smaller Δ (= - ). In a former work, the solvent effects of acetonitrile chloroform on the Δ of NADH/NAD model reactions were determined, and the DAD's of the productive reactant complexes (PRCs) were computed to substitute the DAD for the DAD-Δ correlation study. A smaller Δ was found in the more polar acetonitrile where the positively charged PRC is better solvated and has a shorter DAD, indirectly supporting the hypothesis. In this work, the TRS structures of different DAD's for the hydride tunneling reaction from 1,3-dimethyl-2-phenylimidazoline to 10-methylacridinium were computed. The N-CH/CD secondary KIEs on both reactants were calculated and fitted to the observed values to find the DAD order in both solutions. It was found that the equilibrium DAD is shorter in acetonitrile than in chloroform. Results directly support the DAD-Δ correlation hypothesis as well as the explanation that links -dependence of KIEs to DAD sampling catalysis in enzymes.
最近在野生型酶中观察到几乎与温度无关的动力学同位素效应(KIE),以及在变体中观察到的依赖于-的 KIE,这表明酶中的 H 隧穿是由快速的蛋白质振动辅助的,这些振动有助于短的供体-受体距离(DAD)的采样。这支持了最近提出的蛋白质振动在 DAD 采样催化中的作用。然而,利用 KIE 对依赖-来暗示与蛋白质振动相关的 DAD 采样仍存在争议。我们提出了一个关于相关性的假设,并设计了溶液中的实验来进行研究。假设是,具有较短 DAD 的更刚性体系在隧穿准备态(TRS)下产生较弱的-依赖 KIE,即较小的Δ(= -)。在以前的工作中,确定了乙腈-氯仿对 NADH/NAD 模型反应的溶剂效应,并且计算了产物反应物复合物(PRC)的 DAD,以取代 DAD-Δ相关性研究中的 DAD。在更具极性的乙腈中发现了较小的Δ,其中带正电荷的 PRC 更好地溶剂化并且具有较短的 DAD,这间接支持了假设。在这项工作中,计算了从 1,3-二甲基-2-苯基咪唑啉到 10-甲基吖啶鎓的氢化物隧穿反应的不同 DAD 的 TRS 结构。计算了两种反应物上的 N-CH/CD 二级 KIE,并将其拟合到观察值以找到两种溶液中的 DAD 顺序。发现乙腈中的平衡 DAD 比氯仿中的短。结果直接支持 DAD-Δ 相关性假设,以及将 KIE 对-的依赖性与酶中的 DAD 采样催化联系起来的解释。