Krinner Axel, Hoffmann Martin, Loeffler Markus, Drasdo Dirk, Galle Joerg
Interdisciplinary Centre for Bioinformatics, University of Leipzig, Haertelstr, 16-18, 04107 Leipzig, Germany.
BMC Syst Biol. 2010 May 27;4:73. doi: 10.1186/1752-0509-4-73.
In vitro cultivated stem cell populations are in general heterogeneous with respect to their expression of differentiation markers. In hematopoietic progenitor populations, this heterogeneity has been shown to regenerate within days from isolated subpopulations defined by high or low marker expression. This kind of plasticity has been suggested to be a fundamental feature of mesenchymal stem cells (MSCs) as well. Here, we study MSC plasticity on the level of individual cells applying a multi-scale computer model that is based on the concept of noise-driven stem cell differentiation.
By simulation studies, we provide detailed insight into the kinetics of MSC organisation. Monitoring the fates of individual cells in high and low oxygen culture, we calculated the average transition times of individual cells into stem cell and differentiated states. We predict that at low oxygen the heterogeneity of a MSC population with respect to differentiation regenerates from any selected subpopulation in about two days. At high oxygen, regeneration becomes substantially slowed down. Simulation results on the composition of the functional stem cell pool of MSC populations suggest that most of the cells that constitute this pool originate from more differentiated cells.
Individual cell-based models are well-suited to provide quantitative predictions on essential features of the spatio-temporal organisation of MSC in vitro. Our predictions on MSC plasticity and its dependence on the environment motivate a number of in vitro experiments for validation. They may contribute to a better understanding of MSC organisation in vitro, including features of clonal expansion, environmental adaptation and stem cell ageing.
体外培养的干细胞群体在分化标志物表达方面通常是异质性的。在造血祖细胞群体中,这种异质性已被证明可在数天内从由高或低标志物表达定义的分离亚群中再生。这种可塑性也被认为是间充质干细胞(MSC)的一个基本特征。在此,我们应用基于噪声驱动干细胞分化概念的多尺度计算机模型,在单个细胞水平上研究MSC的可塑性。
通过模拟研究,我们深入了解了MSC组织的动力学。监测高氧和低氧培养中单个细胞的命运,我们计算了单个细胞转变为干细胞和分化状态的平均时间。我们预测,在低氧条件下,MSC群体在分化方面的异质性可在约两天内从任何选定的亚群中再生。在高氧条件下,再生显著减慢。关于MSC群体功能性干细胞池组成的模拟结果表明,构成该池的大多数细胞起源于分化程度更高的细胞。
基于单个细胞的模型非常适合对体外MSC时空组织的基本特征进行定量预测。我们对MSC可塑性及其对环境依赖性的预测激发了一系列体外实验以进行验证。它们可能有助于更好地理解体外MSC的组织,包括克隆扩增、环境适应和干细胞衰老等特征。