KLF1 在原红细胞中的 ChIP-seq 分析揭示了其在红细胞生成中的全球作用。

A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells.

机构信息

Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland 4072, Australia.

出版信息

Genome Res. 2010 Aug;20(8):1052-63. doi: 10.1101/gr.106575.110. Epub 2010 May 27.

Abstract

KLF1 regulates a diverse suite of genes to direct erythroid cell differentiation from bipotent progenitors. To determine the local cis-regulatory contexts and transcription factor networks in which KLF1 operates, we performed KLF1 ChIP-seq in the mouse. We found at least 945 sites in the genome of E14.5 fetal liver erythroid cells which are occupied by endogenous KLF1. Many of these recovered sites reside in erythroid gene promoters such as Hbb-b1, but the majority are distant to any known gene. Our data suggests KLF1 directly regulates most aspects of terminal erythroid differentiation including production of alpha- and beta-globin protein chains, heme biosynthesis, coordination of proliferation and anti-apoptotic pathways, and construction of the red cell membrane and cytoskeleton by functioning primarily as a transcriptional activator. Additionally, we suggest new mechanisms for KLF1 cooperation with other transcription factors, in particular the erythroid transcription factor GATA1, to maintain homeostasis in the erythroid compartment.

摘要

KLF1 调节多种基因,指导多能祖细胞向红细胞分化。为了确定 KLF1 作用的局部顺式调控环境和转录因子网络,我们在小鼠中进行了 KLF1 ChIP-seq 实验。我们在 E14.5 胎肝红细胞中的基因组中发现了至少 945 个由内源性 KLF1 占据的位点。这些回收的位点中的许多位于红细胞基因启动子如 Hbb-b1 中,但大多数位于任何已知基因的远处。我们的数据表明 KLF1 直接调节红细胞分化的大多数方面,包括产生α和β珠蛋白链、血红素生物合成、增殖和抗凋亡途径的协调以及通过主要作为转录激活剂来构建红细胞膜和细胞骨架。此外,我们提出了 KLF1 与其他转录因子(特别是红细胞转录因子 GATA1)合作的新机制,以维持红细胞区室的内稳态。

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