Imperial College London, Silwood Park Campus, Ascot, Berkshire, UK.
BMC Evol Biol. 2010 Jun 11;10:175. doi: 10.1186/1471-2148-10-175.
The species is a fundamental unit of biological pattern and process, but its delimitation has proven a ready source of argument and disagreement. Here, we discuss four key steps that utilize statistical thresholds to describe the morphological variability within a sample and hence assess whether there is evidence for one or multiple species. Once the initial set of biologically relevant traits on comparable individuals has been identified, there is no need for the investigator to hypothesise how specimens might be divided among groups, nor the traits on which groups might be separated.
Principal components are obtained using robust covariance estimates and retained only if they exceed threshold amounts of explanatory power, before model-based clustering is performed on the dimension-reduced space. We apply these steps in an attempt to resolve ongoing debates among taxonomists working on the extinct Eocene planktonic foraminifera Turborotalia, providing statistical evidence for two species shortly before the lineage's extinction near the Eocene/Oligocene boundary.
By estimating variance robustly (samples containing incipient species are unlikely to be scaled optimally by means and standard deviations) and identifying thresholds relevant to a particular system rather than universal standards, the steps of the framework aim to optimize the chances of delineation without imposing pre-conceived patterns onto estimates of species limits.
物种是生物模式和过程的基本单位,但对其进行划分已被证明是引发争论和分歧的根源。在这里,我们讨论了四个关键步骤,这些步骤利用统计阈值来描述样本内的形态变异性,从而评估是否有证据表明存在一个或多个物种。一旦确定了具有生物学意义的可比个体的初始特征集,就无需研究人员假设标本可能如何分组,也无需假设分组的特征。
使用稳健的协方差估计来获得主成分,仅当它们超过解释能力的阈值量时才保留下来,然后在降维空间上执行基于模型的聚类。我们应用这些步骤试图解决从事已灭绝始新世浮游有孔虫 Turborotalia 研究的分类学家之间正在进行的争论,为该谱系在始新世/渐新世边界附近灭绝前不久的两个物种提供了统计证据。
通过稳健地估计方差(不太可能通过均值和标准差对包含初始物种的样本进行最佳缩放)并确定与特定系统相关而不是与通用标准相关的阈值,该框架的步骤旨在优化划分的机会,而不会将预先设想的模式强加于物种界限的估计。