Department of Entomology and Genetics Program, Michigan State University, East Lansing, Michigan 48824, USA.
BMC Genomics. 2010 Jun 16;11:380. doi: 10.1186/1471-2164-11-380.
Two fifths of the world's population is at risk from dengue. The absence of effective drugs and vaccines leaves vector control as the primary intervention tool. Understanding dengue virus (DENV) host interactions is essential for the development of novel control strategies. The availability of genome sequences for both human and mosquito host greatly facilitates genome-wide studies of DENV-host interactions.
We developed the first draft of the mosquito protein interaction network using a computational approach. The weighted network includes 4,214 Aedes aegypti proteins with 10,209 interactions, among which 3,500 proteins are connected into an interconnected scale-free network. We demonstrated the application of this network for the further annotation of mosquito proteins and dissection of pathway crosstalk. Using three datasets based on physical interaction assays, genome-wide RNA interference (RNAi) screens and microarray assays, we identified 714 putative DENV-associated mosquito proteins. An integrated analysis of these proteins in the network highlighted four regions consisting of highly interconnected proteins with closely related functions in each of replication/transcription/translation (RTT), immunity, transport and metabolism. Putative DENV-associated proteins were further selected for validation by RNAi-mediated gene silencing, and dengue viral titer in mosquito midguts was significantly reduced for five out of ten (50.0%) randomly selected genes.
Our results indicate the presence of common host requirements for DENV in mosquitoes and humans. We discuss the significance of our findings for pharmacological intervention and genetic modification of mosquitoes for blocking dengue transmission.
世界上五分之二的人口面临登革热的风险。由于缺乏有效的药物和疫苗,病媒控制成为主要的干预手段。了解登革病毒(DENV)与宿主的相互作用对于开发新的控制策略至关重要。人类和蚊子宿主的基因组序列的可用性极大地促进了 DENV-宿主相互作用的全基因组研究。
我们使用计算方法开发了蚊子蛋白质相互作用网络的第一个草案。加权网络包括 4214 种埃及伊蚊蛋白,有 10209 个相互作用,其中 3500 个蛋白连接成一个相互连接的无标度网络。我们展示了该网络在蚊子蛋白的进一步注释和途径串扰剖析中的应用。使用基于物理相互作用测定、全基因组 RNA 干扰(RNAi)筛选和微阵列测定的三个数据集,我们鉴定了 714 种可能与 DENV 相关的蚊子蛋白。这些蛋白在网络中的综合分析突出了四个区域,每个区域都由复制/转录/翻译(RTT)、免疫、运输和代谢中具有密切相关功能的高度相互连接的蛋白组成。通过 RNAi 介导的基因沉默对这些网络中的假定 DENV 相关蛋白进行了进一步验证,在 10 个随机选择的基因中,有 5 个(50.0%)的基因显著降低了蚊子中肠道中的登革热病毒滴度。
我们的结果表明,蚊子和人类的 DENV 存在共同的宿主需求。我们讨论了我们的发现对于药理学干预和遗传修饰蚊子以阻断登革热传播的意义。