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利用傅里叶变换红外差谱技术研究涉及 PSII 中氧释放 Mn(4)Ca 簇的 D1-Glu65、D2-Glu312 和 D1-Glu329 附近氢键的广泛网络的证据。

Evidence from FTIR difference spectroscopy of an extensive network of hydrogen bonds near the oxygen-evolving Mn(4)Ca cluster of photosystem II involving D1-Glu65, D2-Glu312, and D1-Glu329.

机构信息

Department of Biochemistry, University of California, Riverside, California 92521, USA.

出版信息

Biochemistry. 2010 Aug 10;49(31):6655-69. doi: 10.1021/bi100730d.

Abstract

Analyses of the refined X-ray crystallographic structures of photosystem II (PSII) at 2.9-3.5 A have revealed the presence of possible channels for the removal of protons from the catalytic Mn(4)Ca cluster during the water-splitting reaction. As an initial attempt to verify these channels experimentally, the presence of a network of hydrogen bonds near the Mn(4)Ca cluster was probed with FTIR difference spectroscopy in a spectral region sensitive to the protonation states of carboxylate residues and, in particular, with a negative band at 1747 cm(-1) that is often observed in the S(2)-minus-S(1) FTIR difference spectrum of PSII from the cyanobacterium Synechocystis sp. PCC 6803. On the basis of its 4 cm(-1) downshift in D(2)O, this band was assigned to the carbonyl stretching vibration (C horizontal lineO) of a protonated carboxylate group whose pK(a) decreases during the S(1) to S(2) transition. The positive charge that forms on the Mn(4)Ca cluster during the S(1) to S(2) transition presumably causes structural perturbations that are transmitted to this carboxylate group via electrostatic interactions and/or an extended network of hydrogen bonds. In an attempt to identify the carboxylate group that gives rise to this band, the FTIR difference spectra of PSII core complexes from the mutants D1-Asp61Ala, D1-Glu65Ala, D1-Glu329Gln, and D2-Glu312Ala were examined. In the X-ray crystallographic models, these are the closest carboxylate residues to the Mn(4)Ca cluster that do not ligate Mn or Ca and all are highly conserved. The 1747 cm(-1) band is present in the S(2)-minus-S(1) FTIR difference spectrum of D1-Asp61Ala but absent from the corresponding spectra of D1-Glu65Ala, D2-Glu312Ala, and D1-Glu329Gln. The band is also sharply diminished in magnitude in the wild type when samples are maintained at a relative humidity of </=85%. It is proposed that D1-Glu65, D2-Glu312, and D1-Glu329 participate in a common network of hydrogen bonds that includes water molecules and the carboxylate group that gives rise to the 1747 cm(-1) band. It is further proposed that the mutation of any of these three residues, or partial dehydration caused by maintaining samples at a relative humidity of <or=85%, disrupts the network sufficiently that the structural perturbations associated with the S(1) to S(2) transition are no longer transmitted to the carboxylate group that gives rise to the 1747 cm(-1) band. Because D1-Glu329 is located approximately 20 A from D1-Glu65 and D2-Glu312, the postulated network of hydrogen bonds must extend for at least 20 A across the lumenal face of the Mn(4)Ca cluster. The D1-Asp61Ala, D1-Glu65Ala, and D2-Glu312Ala mutations also appear to substantially decrease the fraction of PSII reaction centers that undergo the S(3) to S(0) transition in response to a saturating flash. This behavior is consistent with D1-Asp61, D1-Glu65, and D2-Glu312 participating in a dominant proton egress channel that links the Mn(4)Ca cluster with the thylakoid lumen.

摘要

对 2.9-3.5Å 分辨率的光系统 II(PSII)精细 X 射线晶体结构的分析表明,在水分解反应过程中,可能存在从 Mn(4)Ca 簇中除去质子的通道。作为实验验证这些通道的初步尝试,利用傅里叶变换红外差谱法(FTIR)在对羧酸残基质子化状态敏感的光谱区域(特别是在 PSII 的 S(2)-minus-S(1)FTIR 差谱中经常观察到的负带 1747cm(-1))研究了 Mn(4)Ca 簇附近氢键网络的存在。基于其在 D(2)O 中的 4cm(-1)位移,该带被分配给质子化羧酸盐基团的羰基伸缩振动(C 水平线 O),其 pK(a)在 S(1)到 S(2)转变过程中降低。在 S(1)到 S(2)转变过程中,Mn(4)Ca 簇上形成的正电荷可能导致结构扰动,通过静电相互作用和/或扩展的氢键网络传递到该羧酸盐基团。为了确定产生该带的羧酸盐基团,研究了突变体 D1-Asp61Ala、D1-Glu65Ala、D1-Glu329Gln 和 D2-Glu312Ala 的 PSII 核心复合物的 FTIR 差谱。在 X 射线晶体结构模型中,这些是离 Mn(4)Ca 簇最近的羧酸盐残基,它们不与 Mn 或 Ca 配位,并且都是高度保守的。在 D1-Asp61Ala 的 S(2)-minus-S(1)FTIR 差谱中存在 1747cm(-1)带,但在 D1-Glu65Ala、D2-Glu312Ala 和 D1-Glu329Gln 的相应光谱中不存在。当样品保持在相对湿度 <=85%时,该带的强度也明显减小。提出 D1-Glu65、D2-Glu312 和 D1-Glu329 参与包括水分子和产生 1747cm(-1)带的羧酸盐基团的共同氢键网络。进一步提出,这些残基中的任何一个突变,或由于将样品保持在相对湿度 <=85%而导致的部分脱水,都会破坏网络,使得与 S(1)到 S(2)转变相关的结构扰动不再传递到产生 1747cm(-1)带的羧酸盐基团。由于 D1-Glu329 位于 D1-Glu65 和 D2-Glu312 约 20Å 处,因此假定的氢键网络必须至少延伸 20Å 穿过 Mn(4)Ca 簇的腔面。D1-Asp61Ala、D1-Glu65Ala 和 D2-Glu312Ala 突变似乎也显著降低了 PSII 反应中心在响应饱和闪光时经历 S(3)到 S(0)转变的分数。这种行为与 D1-Asp61、D1-Glu65 和 D2-Glu312 参与主导质子出口通道一致,该通道将 Mn(4)Ca 簇与类囊体腔连接起来。

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本文引用的文献

1
QM/MM Models of the O2-Evolving Complex of Photosystem II.
J Chem Theory Comput. 2006 Jul;2(4):1119-34. doi: 10.1021/ct060018l.
2
Recent progress in the crystallographic studies of photosystem II.
Chemphyschem. 2010 Apr 26;11(6):1160-71. doi: 10.1002/cphc.200900901.
7
Proton transfer in catalysis and the role of proton shuttles in carbonic anhydrase.
Biochim Biophys Acta. 2010 Feb;1804(2):422-6. doi: 10.1016/j.bbapap.2009.08.003. Epub 2009 Aug 11.
8
Fourier transform infrared (FTIR) spectroscopy.
Photosynth Res. 2009 Aug-Sep;101(2-3):157-70. doi: 10.1007/s11120-009-9439-x. Epub 2009 Jun 10.

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