• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

嗜热栖热菌内切葡聚糖酶 Cel5A 的生化特性和晶体结构。

Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima.

机构信息

Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

出版信息

J Struct Biol. 2010 Dec;172(3):372-9. doi: 10.1016/j.jsb.2010.06.018. Epub 2010 Jul 3.

DOI:10.1016/j.jsb.2010.06.018
PMID:20599513
Abstract

Tm_Cel5A, which belongs to family 5 of the glycoside hydrolases, is an extremely stable enzyme among the endo-acting glycosidases present in the hyperthermophilic organism Thermotoga maritima. Members of GH5 family shows a common (β/α)(8) TIM-barrel fold in which the catalytic acid/base and nucleophile are located on strands β-4 and β-7 of the barrel fold. Thermally resistant cellulases are desirable for lignocellulosic biofuels production and the Tm_Cel5A is an excellent candidate for use in the degradation of polysaccharides present on biomass. This paper describes two Tm_Cel5A structures (crystal forms I and II) solved at 2.20 and 1.85Å resolution, respectively. Our analyses of the Tm_Cel5A structure and comparison to a mesophilic GH5 provides a basis for the thermostability associated with Tm_Cel5A. Furthermore, both crystal forms of Tm_Cel5A possess a cadmium (Cd(2+)) ion bound between the two catalytic residues. Activity assays of Tm_Cel5A confirmed a strong inhibition effect in the presence of Cd(2+) metal ions demonstrating competition with the natural substrate for the active site. Based on the structural information we have obtained for Tm_Cel5A, protein bioengineering can be used to potentially increase the thermostability of mesophilic cellulase enzymes.

摘要

Tm_Cel5A 属于糖苷水解酶家族 5,是嗜热古菌 Thermotoga maritima 中存在的内切糖苷酶中极其稳定的酶。GH5 家族的成员在其中展示出共同的(β/α)(8)TIM 桶状折叠,其中催化酸/碱和亲核试剂位于桶状折叠的β-4 和 β-7 链上。耐热纤维素酶是木质纤维素生物燃料生产所需要的,而 Tm_Cel5A 是用于降解生物质上存在的多糖的优秀候选酶。本文描述了两种 Tm_Cel5A 结构(晶型 I 和 II),分别在 2.20 和 1.85Å 分辨率下解析。我们对 Tm_Cel5A 结构的分析和与嗜温 GH5 的比较为 Tm_Cel5A 的热稳定性提供了基础。此外,Tm_Cel5A 的两种晶型都含有一个镉(Cd(2+))离子结合在两个催化残基之间。Tm_Cel5A 的活性测定证实了在存在 Cd(2+) 金属离子的情况下具有强烈的抑制作用,表明其与天然底物竞争活性位点。基于我们获得的 Tm_Cel5A 的结构信息,可以通过蛋白质生物工程来潜在地提高嗜温纤维素酶的热稳定性。

相似文献

1
Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima.嗜热栖热菌内切葡聚糖酶 Cel5A 的生化特性和晶体结构。
J Struct Biol. 2010 Dec;172(3):372-9. doi: 10.1016/j.jsb.2010.06.018. Epub 2010 Jul 3.
2
Site-directed mutagenesis and CBM engineering of Cel5A (Thermotoga maritima).嗜热栖热菌Cel5A的定点诱变与纤维素结合模块工程
FEMS Microbiol Lett. 2008 Oct;287(2):205-11. doi: 10.1111/j.1574-6968.2008.01324.x. Epub 2008 Aug 22.
3
Crystal structure and substrate-binding mode of cellulase 12A from Thermotoga maritima.嗜热栖热菌纤维素酶 12A 的晶体结构和底物结合模式。
Proteins. 2011 Apr;79(4):1193-204. doi: 10.1002/prot.22953. Epub 2011 Jan 25.
4
Diverse substrate recognition mechanism revealed by Thermotoga maritima Cel5A structures in complex with cellotetraose, cellobiose and mannotriose.嗜热栖热菌Cel5A与纤维四糖、纤维二糖和甘露三糖复合物结构揭示的多种底物识别机制
Biochim Biophys Acta. 2011 Dec;1814(12):1832-40. doi: 10.1016/j.bbapap.2011.07.020. Epub 2011 Aug 4.
5
A novel salt-tolerant endo-beta-1,4-glucanase Cel5A in Vibrio sp. G21 isolated from mangrove soil.从红树林土壤中分离得到的一种新型耐盐内切 β-1,4-葡聚糖酶 Cel5A,其来源为 Vibrio sp. G21。
Appl Microbiol Biotechnol. 2010 Jul;87(4):1373-82. doi: 10.1007/s00253-010-2554-y.
6
Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8.嗜热栖热菌MSB8木聚糖酶10B的底物亚位点结构基础及高热稳定性
Proteins. 2005 Dec 1;61(4):999-1009. doi: 10.1002/prot.20700.
7
Crystal structure of the reaction complex of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Thermotoga maritima refines the catalytic mechanism and indicates a new mechanism of allosteric regulation.嗜热栖热菌3-脱氧-D-阿拉伯庚酮糖酸-7-磷酸合酶反应复合物的晶体结构完善了催化机制,并揭示了一种变构调节的新机制。
J Mol Biol. 2004 Aug 6;341(2):455-66. doi: 10.1016/j.jmb.2004.05.077.
8
Cloning and characterization of a thermostable and halo-tolerant endoglucanase from Thermoanaerobacter tengcongensis MB4.从热厌氧菌 Thermoanaerobacter tengcongensis MB4 中克隆和特性分析一种耐热耐盐内切葡聚糖酶。
Appl Microbiol Biotechnol. 2011 Jan;89(2):315-26. doi: 10.1007/s00253-010-2842-6. Epub 2010 Aug 28.
9
A flexible loop for mannan recognition and activity enhancement in a bifunctional glycoside hydrolase family 5.一种用于甘露聚糖识别和活性增强的柔性环在双功能糖苷水解酶家族 5 中。
Biochim Biophys Acta Gen Subj. 2018 Mar;1862(3):513-521. doi: 10.1016/j.bbagen.2017.11.004. Epub 2017 Nov 3.
10
Regulation of endo-acting glycosyl hydrolases in the hyperthermophilic bacterium Thermotoga maritima grown on glucan- and mannan-based polysaccharides.在以葡聚糖和甘露聚糖为基础的多糖上生长的嗜热栖热菌中内切作用糖基水解酶的调控。
Appl Environ Microbiol. 2002 Feb;68(2):545-54. doi: 10.1128/AEM.68.2.545-554.2002.

引用本文的文献

1
Thermophilic β-mannanases from bacteria: production, resources, structural features and bioengineering strategies.嗜热β-甘露聚糖酶的细菌来源:生产、资源、结构特征和生物工程策略。
World J Microbiol Biotechnol. 2024 Mar 9;40(4):130. doi: 10.1007/s11274-024-03912-4.
2
Glycoside hydrolases in the biodegradation of lignocellulosic biomass.糖苷水解酶在木质纤维素生物质生物降解中的作用
3 Biotech. 2023 Dec;13(12):402. doi: 10.1007/s13205-023-03819-1. Epub 2023 Nov 16.
3
Glucomannan in : Bioactivities, Biosynthesis and Perspective.葡甘露聚糖:生物活性、生物合成及展望。
Genes (Basel). 2022 Oct 27;13(11):1957. doi: 10.3390/genes13111957.
4
Characterization of a novel thermophilic metagenomic GH5 endoglucanase heterologously expressed in Escherichia coli and Saccharomyces cerevisiae.一种在大肠杆菌和酿酒酵母中异源表达的新型嗜热宏基因组GH5内切葡聚糖酶的特性分析
Biotechnol Biofuels Bioprod. 2022 Jul 7;15(1):76. doi: 10.1186/s13068-022-02172-4.
5
Synergic action of an inserted carbohydrate-binding module in a glycoside hydrolase family 5 endoglucanase.插入的碳水化合物结合模块在糖苷水解酶家族 5 内切葡聚糖酶中的协同作用。
Acta Crystallogr D Struct Biol. 2022 May 1;78(Pt 5):633-646. doi: 10.1107/S2059798322002601. Epub 2022 Apr 20.
6
Extremophiles, a Nifty Tool to Face Environmental Pollution: From Exploitation of Metabolism to Genome Engineering.极端微生物:应对环境污染的得力工具:从代谢利用到基因组工程。
Int J Environ Res Public Health. 2021 May 14;18(10):5228. doi: 10.3390/ijerph18105228.
7
Man/Cel5B, a Bifunctional Enzyme Having the Highest Mannanase Activity in the Hyperthermic Environment.人/Cel5B,一种在高温环境中具有最高甘露聚糖酶活性的双功能酶。
Front Bioeng Biotechnol. 2021 Mar 16;9:637649. doi: 10.3389/fbioe.2021.637649. eCollection 2021.
8
Identification of the Clostridial cellulose synthase and characterization of the cognate glycosyl hydrolase, CcsZ.鉴定梭菌纤维素合酶并表征其同源糖苷水解酶 CcsZ。
PLoS One. 2020 Dec 2;15(12):e0242686. doi: 10.1371/journal.pone.0242686. eCollection 2020.
9
Characterization of two GH5 endoglucanases from termite microbiome using synthetic metagenomics.利用合成宏基因组学对来自白蚁微生物组的两种GH5内切葡聚糖酶进行表征。
Appl Microbiol Biotechnol. 2020 Oct;104(19):8351-8366. doi: 10.1007/s00253-020-10831-5. Epub 2020 Aug 20.
10
Designing chimeric enzymes inspired by fungal cellulosomes.受真菌纤维小体启发设计嵌合酶。
Synth Syst Biotechnol. 2020 Feb 8;5(1):23-32. doi: 10.1016/j.synbio.2020.01.003. eCollection 2020 Mar.