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仿生氧锰配合物中质子耦合电子转移的表征:密度泛函理论(DFT)B3LYP 理论水平的评估

Characterization of proton coupled electron transfer in a biomimetic oxomanganese complex: Evaluation of the DFT B3LYP level of theory.

作者信息

Wang Ting, Brudvig Gary, Batista Victor S

机构信息

Department of Chemistry, Yale University, PO Box 208107, New Haven, CT 06520-8107.

出版信息

J Chem Theory Comput. 2010 Jan 29;6(3):755-760. doi: 10.1021/ct900615b.

DOI:10.1021/ct900615b
PMID:20607115
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2896228/
Abstract

The capabilities and limitations of the Becke-3-Lee-Yang-Parr (B3LYP) density functional theory (DFT) for modeling proton coupled electron transfer (PCET) in the mixed-valence oxomanganese complex 1 (bpy)(2)Mn(III)(mu-O)(2)Mn(IV)(bpy)(2) (bpy = 2,2'-bipyridyl) are analyzed. Complex 1 serves as a prototypical synthetic model for studies of redox processes analogous to those responsible for water oxidation in the oxygen-evolving complex (OEC) of photosystem II (PSII). DFT B3LYP free energy calculations of redox potentials and pKa's are obtained according to the thermodynamic cycle formalism applied in conjunction with a continuum solvation model. We find that the pKa's of the oxo-ligands depend strongly on the oxidation states of the complex, changing by approximately 10 pH units (i.e., from pH2 to pH12) upon III,IV-->III,III reduction of complex 1. These computational results are consistent with the experimental pKa's determined by solution magnetic susceptibility and near-IR spectroscopy as well as with the pH dependence of the redox potential reported by cyclic voltammogram measurements, suggesting that the III,IV-->III,III reduction of complex 1 is coupled to protonation of the di-mu-oxo bridge as follows: (bpy)(2)Mn(III)(mu-O)(2) Mn(IV)(bpy)(2)+H(+)+e(-)-->(bpy)(2)Mn(III)(mu-O)(mu-OH)Mn(III)(bpy)(2). It is thus natural to expect that analogous redox processes might strongly modulate the pKa's of oxo and hydroxo/water ligands in the OEC of PSII, leading to deprotonation of the OEC upon oxidation state transitions.

摘要

分析了Becke-3-Lee-Yang-Parr(B3LYP)密度泛函理论(DFT)对混合价态氧锰配合物1 (bpy)(2)Mn(III)(μ-O)(2)Mn(IV)(bpy)(2)(bpy = 2,2'-联吡啶)中质子耦合电子转移(PCET)进行建模的能力和局限性。配合物1是用于研究与光系统II(PSII)的析氧复合物(OEC)中负责水氧化的那些氧化还原过程类似的氧化还原过程的典型合成模型。根据与连续溶剂化模型结合应用的热力学循环形式,获得了氧化还原电位和pKa的DFT B3LYP自由能计算结果。我们发现,氧配体的pKa强烈依赖于配合物的氧化态,配合物1从III,IV→III,III还原时,其pKa变化约10个pH单位(即从pH2变为pH12)。这些计算结果与通过溶液磁化率和近红外光谱测定的实验pKa以及循环伏安图测量报告的氧化还原电位的pH依赖性一致,表明配合物1的III,IV→III,III还原与二-μ-氧桥的质子化耦合如下:(bpy)(2)Mn(III)(μ-O)(2)Mn(IV)(bpy)(2)+H(+)+e(-)→(bpy)(2)Mn(III)(μ-O)(μ-OH)Mn(III)(bpy)(2)。因此,可以自然地预期类似的氧化还原过程可能会强烈调节PSII的OEC中氧和羟基/水配体的pKa,导致OEC在氧化态转变时去质子化。

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3
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9
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