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金黄色葡萄球菌 SH1000 和 8325-4:葡萄球菌研究中关键实验室菌株的比较基因组序列。

Staphylococcus aureus SH1000 and 8325-4: comparative genome sequences of key laboratory strains in staphylococcal research.

机构信息

Antimicrobial Research Centre and Institute of Molecular and Cellular Biology, University of Leeds, Leeds, UK.

出版信息

Lett Appl Microbiol. 2010 Sep;51(3):358-61. doi: 10.1111/j.1472-765X.2010.02885.x. Epub 2010 Jun 10.

Abstract

AIMS

To provide comparative genome sequence data for two related model strains of Staphylococcus aureus (SH1000 and 8325-4) that are used extensively in laboratory research.

METHODS AND RESULTS

Comparative genome sequencing was used to identify genetic differences between Staph. aureus SH1000 and the fully genome-sequenced ancestral strain, Staph. aureus NCTC 8325. PCR amplification and DNA sequencing were employed to determine which of the genetic polymorphisms identified were also present in Staph. aureus 8325-4, a direct derivative of 8325 and the parent strain of SH1000. Aside from known genetic differences between these strains, Staph. aureus SH1000 harboured 15 single-nucleotide polymorphisms compared with 8325 (of which 12 were also found in 8325-4), and a 63-bp deletion upstream of the spa gene not present in either 8325 or 8325-4.

CONCLUSIONS

Staphylococcus aureus SH1000 and 8325-4 contain a number of genetic polymorphisms relative to the progenitor strain of the lineage (8325) and to each other.

SIGNIFICANCE AND IMPACT OF THE STUDY

The comparative genome sequences of SH1000 and 8325-4 presented here define the genotypes of two key strains in staphylococcal laboratory research and reveal genetic polymorphisms that may impact their phenotypic properties.

摘要

目的

为两种常用于实验室研究的金黄色葡萄球菌(SH1000 和 8325-4)相关模式菌株提供比较基因组序列数据。

方法与结果

比较基因组测序用于鉴定金黄色葡萄球菌 SH1000 与完全基因组测序的祖先株金黄色葡萄球菌 NCTC 8325 之间的遗传差异。PCR 扩增和 DNA 测序用于确定在金黄色葡萄球菌 8325-4 中也存在哪些遗传多态性,8325-4 是 8325 的直接衍生物,也是 SH1000 的亲本菌株。除了这些菌株之间已知的遗传差异外,金黄色葡萄球菌 SH1000 与 8325 相比有 15 个单核苷酸多态性(其中 12 个也存在于 8325-4 中),并且 spa 基因上游的 63-bp 缺失在 8325 或 8325-4 中均不存在。

结论

金黄色葡萄球菌 SH1000 和 8325-4 相对于该谱系的祖代菌株(8325)和彼此之间存在许多遗传多态性。

研究的意义和影响

本文提供的 SH1000 和 8325-4 的比较基因组序列定义了两种金黄色葡萄球菌实验室研究的关键菌株的基因型,并揭示了可能影响其表型特性的遗传多态性。

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