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3型腺病毒感染的人喉上皮细胞中微小RNA的高通量测序

High-throughput sequencing of microRNAs in adenovirus type 3 infected human laryngeal epithelial cells.

作者信息

Qi Yuhua, Tu Jing, Cui Lunbiao, Guo Xiling, Shi Zhiyang, Li Shuchun, Shi Wenting, Shan Yunfeng, Ge Yiyue, Shan Jun, Wang Hua, Lu Zuhong

机构信息

State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, SiPaiLou2#, Nanjing 210096, China.

出版信息

J Biomed Biotechnol. 2010;2010:915980. doi: 10.1155/2010/915980. Epub 2010 Jun 9.

Abstract

Adenovirus infection can cause various illnesses depending on the infecting serotype, such as gastroenteritis, conjunctivitis, cystitis, and rash illness, but the infection mechanism is still unknown. MicroRNAs (miRNA) have been reported to play essential roles in cell proliferation, cell differentiation, and pathogenesis of human diseases including viral infections. We analyzed the miRNA expression profiles from adenovirus type 3 (AD3) infected Human laryngeal epithelial (Hep2) cells using a SOLiD deep sequencing. 492 precursor miRNAs were identified in the AD3 infected Hep2 cells, and 540 precursor miRNAs were identified in the control. A total of 44 miRNAs demonstrated high expression and 36 miRNAs showed lower expression in the AD3 infected cells than control. The biogenesis of miRNAs has been analyzed, and some of the SOLiD results were confirmed by Quantitative PCR analysis. The present studies may provide a useful clue for the biological function research into AD3 infection.

摘要

腺病毒感染可根据感染的血清型引起各种疾病,如肠胃炎、结膜炎、膀胱炎和皮疹性疾病,但其感染机制仍不清楚。据报道,微小RNA(miRNA)在细胞增殖、细胞分化以及包括病毒感染在内的人类疾病发病机制中发挥着重要作用。我们使用SOLiD深度测序分析了3型腺病毒(AD3)感染的人喉上皮(Hep2)细胞的miRNA表达谱。在AD3感染的Hep2细胞中鉴定出492个前体miRNA,在对照中鉴定出540个前体miRNA。共有44个miRNA在AD3感染的细胞中高表达,36个miRNA在AD3感染的细胞中表达低于对照。已对miRNA的生物合成进行了分析,一些SOLiD结果通过定量PCR分析得到了证实。本研究可能为AD3感染的生物学功能研究提供有用线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4cc/2896912/37a06a81cbab/JBB2010-915980.001.jpg

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