Zuckerberg Institute for Water Research, J Blaustein Institutes for Desert Research, Ben-Gurion University, Sde Boqer Campus, Israel.
ISME J. 2011 Jan;5(1):71-81. doi: 10.1038/ismej.2010.90. Epub 2010 Jul 22.
Explaining the coexistence of competing species is a major challenge in community ecology. In bacterial systems, competition is often driven by the production of bacteriocins, which are narrow-spectrum proteinaceous toxins that serve to kill closely related species, providing the producer better access to limited resources. Bacteriocin producers have been shown to competitively exclude sensitive, nonproducing strains. However, the dynamics between bacteriocin producers, each lethal to its competitor, are largely unknown. In this study, we used in vitro, in vivo and in silico models to study competitive interactions between bacteriocin producers. Two Escherichia coli strains were generated, each carrying a DNA-degrading bacteriocin (colicins E2 and E7). Using reporter-gene assays, we showed that each DNase bacteriocin is not only lethal to its opponent but, at lower doses, can also induce the expression of its opponent's toxin. In a well-mixed habitat, the E2 producer outcompeted its adversary; however, in structured environments (on plates or in mice colons), the two producers coexisted in a spatially 'frozen' pattern. Coexistence occurred when the producers were initiated with a clumped spatial distribution. This suggests that a 'clump' of each producer can block invasion of the other producer. Agent-based simulation of bacteriocin-mediated competition further showed that mutual exclusion in a structured environment is a relatively robust result. These models imply that colicin-mediated colicin induction enables producers to successfully compete and defend their niche against invaders. This suggests that localized interactions between producers of DNA-degrading toxins can lead to stable coexistence of heterogeneously distributed strains within the bacterial community and to the maintenance of diversity.
解释竞争物种的共存是群落生态学中的一项重大挑战。在细菌系统中,竞争通常由细菌素的产生所驱动,细菌素是一种窄谱蛋白质毒素,用于杀死密切相关的物种,从而使生产者能够更好地获取有限的资源。已证明细菌素生产者能够竞争性地排除敏感的、不产生细菌素的菌株。然而,对彼此对竞争对手都具有致死性的细菌素生产者之间的动态关系,人们却知之甚少。在本研究中,我们使用体外、体内和计算机模拟模型来研究细菌素生产者之间的竞争相互作用。构建了两株大肠杆菌,每株携带一种降解DNA的细菌素(大肠杆菌素E2和E7)。通过报告基因检测,我们发现每种DNA酶细菌素不仅对其对手具有致死性,而且在较低剂量下,还能诱导其对手毒素的表达。在充分混合的环境中,产生E2的菌株胜过其对手;然而,在结构化环境(平板上或小鼠结肠中)中,这两种生产者以空间“冻结”模式共存。当生产者以聚集的空间分布开始时,就会发生共存。这表明每种生产者的一个“簇”可以阻止另一种生产者的入侵。基于主体的细菌素介导竞争模拟进一步表明,在结构化环境中的相互排斥是一个相对稳健的结果。这些模型表明,大肠杆菌素介导的大肠杆菌素诱导使生产者能够成功竞争并保护其生态位免受入侵者侵害。这表明降解DNA毒素生产者之间的局部相互作用可导致细菌群落中异质分布菌株的稳定共存,并维持多样性。