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模型肽在水溶液中的超快动力学和氢键结构。

Ultrafast dynamics and hydrogen-bond structure in aqueous solutions of model peptides.

机构信息

School of Chemistry, University of East Anglia Norwich NR4 7TJ, United Kingdom.

出版信息

J Phys Chem B. 2010 Aug 19;114(32):10684-91. doi: 10.1021/jp106423a.

Abstract

The dynamics of water molecules in the hydration layers of proteins are critical for biological function. Here the molecular dynamics in aqueous solutions of model hydrophilic and amphiphilic dipeptides are studied as a function of concentration using the ultrafast optical Kerr effect (OKE). The OKE is a direct time-domain method which yields both picosecond time scale molecular dynamics and low-frequency (Terahertz) Raman spectra, which contain information on the hydrogen-bonded structure of aqueous solutions. Two distinct concentration regimes are identified, above and below 0.4 M peptide concentration. In the low-concentration regime the tetrahedral water structure is largely preserved but the structural dynamics in water are slowed significantly by interaction with the peptide. The slow down is more marked for the hydrophilic than the amphiphilic peptide. Suppression of water structural dynamics observed is greater than that reported for retardation of the water reorientation in NMR, reflecting the different dynamics probed by these different methods. Above 0.4 M the tetrahedral water structure is more strongly perturbed, a contribution to the THz Raman spectrum from the solvated peptide is observed, and structural dynamics in the solution are markedly slowed. This is assigned to slow relaxation within an H-bonded network of peptide molecules. The strong concentration dependence observed goes some way toward explaining disagreements between different measurements of the dynamics of peptide solvation which have appeared in the literature.

摘要

水分子在蛋白质水合层中的动力学对于生物功能至关重要。本研究使用超快光克尔效应(OKE),研究了模型亲水和两亲二肽水溶液中浓度依赖性的分子动力学。OKE 是一种直接的时域方法,可同时获得皮秒时间尺度的分子动力学和低频(太赫兹)拉曼光谱,其中包含有关水溶液中氢键结构的信息。确定了两个明显的浓度范围,肽浓度高于和低于 0.4 M。在低浓度范围内,四面体水结构基本保持不变,但与肽相互作用会显著减慢水中的结构动力学。亲水性肽比两亲肽的减速更为明显。观察到的水结构动力学抑制大于 NMR 中报道的水重取向的延迟,这反映了这些不同方法所探测的不同动力学。高于 0.4 M 时,四面体水结构受到更强的干扰,观察到溶剂化肽对太赫兹拉曼光谱的贡献,并且溶液中的结构动力学明显减慢。这归因于肽分子氢键网络内的缓慢松弛。观察到的强浓度依赖性在一定程度上解释了文献中出现的肽溶剂化动力学的不同测量值之间的分歧。

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