Murarka Rajesh K, Head-Gordon Teresa
Department of Bioengineering, University of California, Berkeley, Berkeley, California 94720, USA.
J Phys Chem B. 2008 Jan 10;112(1):179-86. doi: 10.1021/jp073440m. Epub 2007 Dec 11.
We report on molecular dynamics simulations of the frequency-dependent dielectric relaxation spectra at room temperature for aqueous solutions of a hydrophilic peptide and an amphiphilic peptide at two concentrations. We find that only the high-concentration amphiphilic peptide solution exhibits an anomalous dielectric increment over that of pure water, while the hydrophilic peptide exhibits a significant dielectric decrement. The dielectric component analysis carried out by decomposing these peptide solutions into peptide, hydration layer, and outer layer(s) of water clearly shows the presence of a unique dipolar component with a relaxation time scale on the order of approximately 25 ps (compared to the bulk water time scale of approximately 11 ps) that originates from the interaction between the hydration layer water and the outer layer(s) of water. Results obtained from the dielectric component analysis further show the emergence of a distinct and much lower frequency relaxation process for the high-concentration amphiphilic peptide compared to the hydrophilic peptide due to strong peptide dipolar couplings to all constituents, accompanied by a slowing of the structural relaxation in all water layers, giving rise to time scales close to approximately 1 ns. We suggest that the molecular origin of the dielectric relaxation anomalies is due to frustration in the water network arising from the amphiphilic chemistry of the peptide that does not allow it to reorient on the picosecond time scale of bulk water motions. This explanation is consistent with the idea of the "slaving" of residue side chain motions to protein surface water, and furthermore offers the possibility that the anomalous dynamics observed from a number of spectroscopies arises at the interface of hydrophobic and hydrophilic domains on the protein surface.
我们报告了在室温下对两种浓度的亲水性肽和两亲性肽水溶液的频率相关介电弛豫光谱进行的分子动力学模拟。我们发现,只有高浓度的两亲性肽溶液表现出相对于纯水的异常介电增量,而亲水性肽表现出显著的介电减量。通过将这些肽溶液分解为肽、水化层和水的外层来进行的介电成分分析清楚地表明,存在一种独特的偶极成分,其弛豫时间尺度约为25皮秒(与约11皮秒的本体水时间尺度相比),该成分源于水化层水与水的外层之间的相互作用。介电成分分析得到的结果进一步表明,与亲水性肽相比,高浓度两亲性肽出现了一个明显且频率低得多的弛豫过程,这是由于肽与所有成分之间强烈的偶极耦合,同时所有水层中的结构弛豫减慢,产生了接近约1纳秒的时间尺度。我们认为,介电弛豫异常的分子起源是由于肽的两亲化学性质导致水网络中的受挫,这使得它无法在本体水运动的皮秒时间尺度上重新取向。这种解释与残基侧链运动受蛋白质表面水“奴役”的观点一致,此外还提供了一种可能性,即从多种光谱学观察到的异常动力学出现在蛋白质表面疏水和亲水区域的界面处。