郊狼线粒体DNA基因型频率分析：有效等位基因数的估计
Analysis of coyote mitochondrial DNA genotype frequencies: estimation of the effective number of alleles.
作者信息
Lehman N, Wayne R K
机构信息
Department of Biology, University of California, Los Angeles 90024-1606.
出版信息
Genetics. 1991 Jun;128(2):405-16. doi: 10.1093/genetics/128.2.405.
Abstract
A restriction-site survey of 327 coyotes (Canis latrans) from most parts of their North American range reveals 32 mitochondrial DNA (mtDNA) genotypes. The genotypes are not strongly partitioned in space, suggesting that there is high gene flow among coyote subpopulations. Consequently, each new geographic location added to the study has a decreasing probability of containing a mtDNA genotype that had not been previously discovered. This being the case, by using Monte Carlo sampling experiments, we can estimate the total number of genotypes that would be found if all possible localities were surveyed. This estimate of total genotypic variability agrees qualitatively with estimates based on theoretical considerations of the expected number of alleles in a stable population. We also predict effective population sizes from genotype data. The accuracy of these estimates is thought to be dependent on the fact that coyotes are not highly genetically structured, a situation which may apply to highly mobile species.
摘要
对来自北美大部分分布区域的327只郊狼（犬属）进行的限制性酶切位点调查揭示了32种线粒体DNA（mtDNA）基因型。这些基因型在空间上没有明显的划分，这表明郊狼亚种群之间存在高度的基因流动。因此，每一个新加入研究的地理位置包含先前未发现的mtDNA基因型的概率都在降低。在这种情况下，通过蒙特卡洛抽样实验，我们可以估计如果对所有可能的地点进行调查会发现的基因型总数。这种对总基因型变异性的估计在定性上与基于稳定种群中等位基因预期数量的理论考虑所做的估计一致。我们还根据基因型数据预测有效种群大小。这些估计的准确性被认为取决于郊狼没有高度遗传结构这一事实，这种情况可能适用于高度移动的物种。
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本文引用的文献
1
THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION.有限种群中能够维持的等位基因数量。
Genetics. 1964 Apr;49(4):725-38. doi: 10.1093/genetics/49.4.725.
2
Polymorphic sites and the mechanism of evolution in human mitochondrial DNA.人类线粒体DNA中的多态性位点与进化机制。
Genetics. 1984 Mar;106(3):479-99. doi: 10.1093/genetics/106.3.479.
3
Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data.基于限制性酶切位点数据的核苷酸替换数的最大似然估计。
Genetics. 1983 Sep;105(1):207-17. doi: 10.1093/genetics/105.1.207.
4
Mitochondrial DNA sequences of primates: tempo and mode of evolution.灵长类动物的线粒体DNA序列：进化的节奏与模式
J Mol Evol. 1982;18(4):225-39. doi: 10.1007/BF01734101.
5
Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles.由于中性和近中性等位基因的突变产生，有限种群中维持的遗传变异性。
Genet Res. 1968 Jun;11(3):247-69. doi: 10.1017/s0016672300011459.
6
Evolutionary rate at the molecular level.分子水平的进化速率。
Nature. 1968 Feb 17;217(5129):624-6. doi: 10.1038/217624a0.
7
Addendum to a paper of W. Ewens.
Theor Popul Biol. 1972 Mar;3(1):113-6. doi: 10.1016/0040-5809(72)90036-6.
8
A note on the sampling theory for infinite alleles and infinite sites models.关于无限等位基因模型和无限位点模型的抽样理论的一则注释。
Theor Popul Biol. 1974 Oct;6(2):143-8. doi: 10.1016/0040-5809(74)90020-3.
9
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.一种考虑核苷酸和密码子变化相对可能性来估计核苷酸替换同义率和非同义率的新方法。
Mol Biol Evol. 1985 Mar;2(2):150-74. doi: 10.1093/oxfordjournals.molbev.a040343.
10
Evidence for higher rates of nucleotide substitution in rodents than in man.啮齿动物的核苷酸替换率高于人类的证据。
Proc Natl Acad Sci U S A. 1985 Mar;82(6):1741-5. doi: 10.1073/pnas.82.6.1741.
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