三种双子叶植物对低氧环境早期转录组反应的比较。
Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species.
机构信息
Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada, Southern Crop Protection and Food Research Centre, London, Ontario, Canada.
出版信息
Plant Signal Behav. 2010 Aug;5(8):1006-9. doi: 10.4161/psb.5.8.12231. Epub 2010 Aug 1.
Abstract
Waterlogging is a serious impediment to crop productivity worldwide which acts to reduce oxygen levels in the rhizosphere due to the low diffusion rate of molecular oxygen in water. Plants respond to low oxygen through rapid and specific changes at both the transcriptional and translational levels. Transcriptional changes to low-oxygen (hypoxia) stress have been studied in a number of plant species using whole genome microarrays. Using transcriptome data from root tissue from early time points (4-5 h) from cotton (Gossypium hirsutum), Arabidopsis and gray poplar (Populus x canescens), we have identified a core set of orthologous genes that responded to hypoxia in similar ways between species, and others that showed species specific responses . Responses to hypoxia were most similar between Arabidopsis and cotton, while the waterlogging tolerant poplar species exhibited some significant differences.
摘要
水涝是全球范围内作物生产力的严重障碍，由于分子氧在水中的扩散速率较低，水涝会降低根际的氧气水平。植物通过在转录和翻译水平上的快速和特异性变化来应对低氧。使用全基因组微阵列研究了许多植物物种对低氧（缺氧）胁迫的转录变化。利用棉花（Gossypium hirsutum）、拟南芥和灰杨（Populus x canescens）根组织早期（4-5 小时）的转录组数据，我们鉴定出了一组核心的同源基因，它们在物种间以相似的方式对缺氧作出响应，还有一些基因表现出物种特异性的响应。拟南芥和棉花之间的缺氧反应最为相似，而耐水涝的杨树物种则表现出一些显著的差异。
相似文献
1
Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species.
Plant Signal Behav. 2010 Aug;5(8):1006-9. doi: 10.4161/psb.5.8.12231. Epub 2010 Aug 1.
2
Global gene expression responses to waterlogging in roots and leaves of cotton (Gossypium hirsutum L.).
Plant Cell Physiol. 2010 Jan;51(1):21-37. doi: 10.1093/pcp/pcp163. Epub 2009 Nov 18.
3
Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
Plant Biotechnol J. 2016 Jan;14(1):72-84. doi: 10.1111/pbi.12358. Epub 2015 Apr 16.
4
Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses.
Plant Physiol. 2010 Mar;152(3):1484-500. doi: 10.1104/pp.109.151845. Epub 2010 Jan 22.
5
Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia.
Plant Physiol. 2009 Jan;149(1):461-73. doi: 10.1104/pp.108.125989. Epub 2008 Nov 12.
6
Transcriptome responses to aluminum stress in roots of aspen (Populus tremula).
BMC Plant Biol. 2010 Aug 23;10:185. doi: 10.1186/1471-2229-10-185.
7
Transcriptome Analysis Reveals Cotton () Genes That Are Differentially Expressed in Cadmium Stress Tolerance.
Int J Mol Sci. 2019 Mar 24;20(6):1479. doi: 10.3390/ijms20061479.
8
Genome-wide transcriptome profiling of black poplar (Populus nigra L.) under boron toxicity revealed candidate genes responsible in boron uptake, transport and detoxification.
Plant Physiol Biochem. 2016 Dec;109:146-155. doi: 10.1016/j.plaphy.2016.09.015. Epub 2016 Sep 19.
9
Root transcript profiling of two Rorippa species reveals gene clusters associated with extreme submergence tolerance.
Plant Physiol. 2013 Nov;163(3):1277-92. doi: 10.1104/pp.113.222588. Epub 2013 Sep 27.
10
Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum).
BMC Genomics. 2014 Nov 6;15(1):961. doi: 10.1186/1471-2164-15-961.
引用本文的文献
1
Ultrastructure, adaptability, and alleviation mechanisms of photosynthetic apparatus in plants under waterlogging: A review.
Photosynthetica. 2022 Aug 18;60(3):430-444. doi: 10.32615/ps.2022.033. eCollection 2022.
2
Endoplasmic reticulum-bound ANAC013 factor is cleaved by RHOMBOID-LIKE 2 during the initial response to hypoxia in .
Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2221308120. doi: 10.1073/pnas.2221308120. Epub 2023 Mar 10.
3
Metabolism and Signaling of Plant Mitochondria in Adaptation to Environmental Stresses.
Int J Mol Sci. 2022 Sep 23;23(19):11176. doi: 10.3390/ijms231911176.
4
Full-Length Transcriptome and RNA-Seq Analyses Reveal the Mechanisms Underlying Waterlogging Tolerance in Kiwifruit ().
Int J Mol Sci. 2022 Mar 17;23(6):3237. doi: 10.3390/ijms23063237.
5
New function of Hypoxia-responsive unknown protein in enhanced resistance to biotic stress.
Plant Signal Behav. 2021 Mar 4;16(3):1868131. doi: 10.1080/15592324.2020.1868131. Epub 2020 Dec 28.
6
Different ways to die in a changing world: Consequences of climate change for tree species performance and survival through an ecophysiological perspective.
Ecol Evol. 2019 Oct 2;9(20):11979-11999. doi: 10.1002/ece3.5663. eCollection 2019 Oct.
7
Comparative Transcriptome Combined with Proteome Analyses Revealed Key Factors Involved in Alfalfa () Response to Waterlogging Stress.
Int J Mol Sci. 2019 Mar 18;20(6):1359. doi: 10.3390/ijms20061359.
8
Soil and Crop Management Practices to Minimize the Impact of Waterlogging on Crop Productivity.
Front Plant Sci. 2019 Feb 12;10:140. doi: 10.3389/fpls.2019.00140. eCollection 2019.
9
Molecular and physiological responses in roots of two full-sib poplars uncover mechanisms that contribute to differences in partial submergence tolerance.
Sci Rep. 2018 Aug 27;8(1):12829. doi: 10.1038/s41598-018-30821-y.
10
Analysis of the regulation networks in grapevine reveals response to waterlogging stress and candidate gene-marker selection for damage severity.
R Soc Open Sci. 2018 Jun 27;5(6):172253. doi: 10.1098/rsos.172253. eCollection 2018 Jun.
本文引用的文献
1
Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses.
Plant Physiol. 2010 Mar;152(3):1484-500. doi: 10.1104/pp.109.151845. Epub 2010 Jan 22.
2
Global gene expression responses to waterlogging in roots and leaves of cotton (Gossypium hirsutum L.).
Plant Cell Physiol. 2010 Jan;51(1):21-37. doi: 10.1093/pcp/pcp163. Epub 2009 Nov 18.
3
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.
Nature. 2009 Aug 20;460(7258):1026-30. doi: 10.1038/nature08258.
4
Inhibition of SNF1-related protein kinase1 activity and regulation of metabolic pathways by trehalose-6-phosphate.
Plant Physiol. 2009 Apr;149(4):1860-71. doi: 10.1104/pp.108.133934. Epub 2009 Feb 4.
5
Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia.
Plant Physiol. 2009 Jan;149(1):461-73. doi: 10.1104/pp.108.125989. Epub 2008 Nov 12.
6
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.
BMC Bioinformatics. 2006 Dec 18;7:535. doi: 10.1186/1471-2105-7-535.
7
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice.
Nature. 2006 Aug 10;442(7103):705-8. doi: 10.1038/nature04920.
8
Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1.
Plant Cell. 2005 May;17(5):1343-59. doi: 10.1105/tpc.105.031625. Epub 2005 Apr 13.
9
Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis.
Plant Physiol. 2005 Mar;137(3):1115-29. doi: 10.1104/pp.104.055475. Epub 2005 Feb 25.
10
Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses.
Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):15898-903. doi: 10.1073/pnas.252637799. Epub 2002 Nov 27.
Zotero 插件