McCaig Chris, Begon Mike, Norman Rachel, Shankland Carron
Department of Computing Science and Mathematics, University of Stirling, Stirling, FK9 4LA, UK.
Theory Biosci. 2011 Mar;130(1):19-29. doi: 10.1007/s12064-010-0106-8. Epub 2010 Aug 31.
Changing scale, for example, the ability to move seamlessly from an individual-based model to a population-based model, is an important problem in many fields. In this paper, we introduce process algebra as a novel solution to this problem in the context of models of infectious disease spread. Process algebra allows us to describe a system in terms of the stochastic behaviour of individuals, and is a technique from computer science. We review the use of process algebra in biological systems, and the variety of quantitative and qualitative analysis techniques available. The analysis illustrated here solves the changing scale problem: from the individual behaviour we can rigorously derive equations to describe the mean behaviour of the system at the level of the population. The biological problem investigated is the transmission of infection, and how this relates to individual interactions.
例如,改变尺度,即从基于个体的模型无缝转换到基于群体的模型的能力,是许多领域中的一个重要问题。在本文中,我们引入进程代数作为在传染病传播模型背景下解决此问题的一种新方法。进程代数使我们能够根据个体的随机行为来描述系统,它是一种来自计算机科学的技术。我们回顾了进程代数在生物系统中的应用以及可用的各种定量和定性分析技术。此处所示的分析解决了尺度变化问题:从个体行为我们可以严格推导出方程来描述系统在群体层面的平均行为。所研究的生物学问题是感染的传播以及这与个体相互作用的关系。