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大分子拥挤对热力学活性的影响:硬球混合物中球形和哑铃形分子的溶解度及二聚常数

The influence of macromolecular crowding on thermodynamic activity: solubility and dimerization constants for spherical and dumbbell-shaped molecules in a hard-sphere mixture.

作者信息

Berg O G

机构信息

Department of Molecular Biology, University of Uppsala Biomedical Center, Sweden.

出版信息

Biopolymers. 1990;30(11-12):1027-37. doi: 10.1002/bip.360301104.

Abstract

Macromolecules in solution can have large effects on the properties of other solutes through nonideal excluded-volume (crowding) interactions. Minton has calculated such effects by treating the macromolecules as a hard-sphere fluid in a background of an inert structureless solvent. In the present paper these calculations are extended by including the primary solvent as a separate component in a hard-sphere mixture. The results are in good agreement with experimental data. However, some predictions of this model differ drastically from those based on Minton's approach. Thus, much smaller effects from macromolecular crowding, particularly by smaller molecules, are expected. The present results also predict a much larger dependence on the shape of the molecules under study; notably for a dimerization reaction, it is found that the excluded-volume effects actually can destabilize side-by-side binding of two spherical molecules, while a dimerization to a spherical complex is stabilized. Therefore there will exist intermediate shapes of complexes whose stability is insensitive to crowded-volume effects. The consequences for crowding effects inside the living cell are also discussed.

摘要

溶液中的大分子可通过非理想的排除体积(拥挤)相互作用对其他溶质的性质产生重大影响。明顿通过将大分子视为惰性无结构溶剂背景下的硬球流体来计算此类影响。在本文中,这些计算通过将主要溶剂作为硬球混合物中的一个单独组分而得到扩展。结果与实验数据吻合良好。然而,该模型的一些预测与基于明顿方法的预测有很大差异。因此,预计大分子拥挤效应会小得多,尤其是较小分子产生的拥挤效应。本文结果还预测对所研究分子形状的依赖性要大得多;值得注意的是,对于二聚反应,发现排除体积效应实际上会使两个球形分子的并排结合不稳定,而形成球形复合物的二聚反应则会得到稳定。因此,将存在复合物的中间形状,其稳定性对拥挤体积效应不敏感。本文还讨论了活细胞内拥挤效应的后果。

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