Department of Biologia Evoluzionistica Sperimentale, University of Bologna, Via Selmi 3, 40126 Bologna, Italy.
Mol Phylogenet Evol. 2010 Nov;57(2):641-57. doi: 10.1016/j.ympev.2010.08.032. Epub 2010 Sep 9.
Despite huge fossil, morphological and molecular data, bivalves' early evolutionary history is still a matter of debate: recently, established phylogeny has been mostly challenged by DNA studies, and little agreement has been reached in literature, because of a substantial lack of widely-accepted methodological approaches to retrieve and analyze bivalves' molecular data. Here we present a molecular phylogeny of the class based on four mitochondrial genes (12s, 16s, cox1, cytb) and a methodological pipeline that proved to be useful to obtain robust results. Actually, best-performing taxon sampling and alignment strategies were tested, and several data partitioning and molecular evolution models were analyzed, thus demonstrating the utility of Bayesian inference and the importance of molding and implementing non-trivial evolutionary models. Therefore, our analysis allowed to target many taxonomic questions of Bivalvia, and to obtain a complete time calibration of the tree depicting bivalves' earlier natural history main events, which mostly dated in the late Cambrian.
尽管有大量的化石、形态和分子数据,但双壳类动物的早期进化历史仍然存在争议:最近,基于 DNA 研究的已建立的系统发育大多受到挑战,由于缺乏广泛接受的方法来检索和分析双壳类动物的分子数据,文献中几乎没有达成共识。在这里,我们基于四个线粒体基因(12s、16s、cox1、cytb)呈现了一类的分子系统发育,并且证明了一种方法学管道对于获得稳健的结果是有用的。实际上,测试了表现最佳的分类单元采样和对齐策略,并分析了几种数据分区和分子进化模型,从而证明了贝叶斯推断的实用性以及塑造和实施非平凡进化模型的重要性。因此,我们的分析能够针对双壳类动物的许多分类学问题,并获得描绘双壳类动物早期自然历史主要事件的树的完整时间校准,这些事件主要发生在晚寒武纪。