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本文引用的文献

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Diversity, abundance, and spatial distribution of sediment ammonia-oxidizing Betaproteobacteria in response to environmental gradients and coastal eutrophication in Jiaozhou Bay, China.中国胶州湾沉积物氨氧化β-变形菌的多样性、丰度和空间分布对环境梯度和沿海富营养化的响应。
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Diversity, abundance and distribution of amoA-encoding archaea in deep-sea methane seep sediments of the Okhotsk Sea.古菌 amoA 编码基因在鄂霍次克海深海甲烷渗漏沉积物中的多样性、丰度和分布。
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3
A comparison of primer sets for detecting 16S rRNA and hydrazine oxidoreductase genes of anaerobic ammonium-oxidizing bacteria in marine sediments.比较用于检测海洋沉积物中厌氧氨氧化菌 16S rRNA 和肼氧化还原酶基因的引物组。
Appl Microbiol Biotechnol. 2010 Mar;86(2):781-90. doi: 10.1007/s00253-009-2361-5. Epub 2010 Jan 27.
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Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity.陆地生态系统中厌氧氨氧化菌的分子检测:分布与多样性。
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Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones.来自不断扩张的海洋死区的一种多功能化能自养生物的宏基因组。
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Denitrification as the dominant nitrogen loss process in the Arabian Sea.反硝化作用是阿拉伯海中主要的氮损失过程。
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The bacterial diversity in an anaerobic ammonium-oxidizing (anammox) reactor community.厌氧氨氧化(anammox)反应器群落中的细菌多样性。
Syst Appl Microbiol. 2009 Jul;32(4):278-89. doi: 10.1016/j.syapm.2009.03.002. Epub 2009 Apr 29.
8
Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom).沿河口营养梯度(英国科尔恩河口)底栖反硝化作用、硝酸盐氨化作用和厌氧氨氧化过程速率以及硝酸盐和亚硝酸盐还原酶基因丰度的变化
Appl Environ Microbiol. 2009 May;75(10):3171-9. doi: 10.1128/AEM.02511-08. Epub 2009 Mar 20.
9
Revising the nitrogen cycle in the Peruvian oxygen minimum zone.重塑秘鲁海洋低氧区的氮循环。
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10
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环境因素塑造了富营养化胶州湾沉积物厌氧氨氧化菌群落。

Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China.

机构信息

State Key Laboratory of Heavy Oil Processing and Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), 66 West Changjiang Rd., Qingdao 266555, China.

出版信息

Appl Environ Microbiol. 2010 Nov;76(21):7036-47. doi: 10.1128/AEM.01264-10. Epub 2010 Sep 10.

DOI:10.1128/AEM.01264-10
PMID:20833786
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2976235/
Abstract

Bacterial anaerobic ammonium oxidation (anammox) is an important process in the marine nitrogen cycle. Because ongoing eutrophication of coastal bays contributes significantly to the formation of low-oxygen zones, monitoring of the anammox bacterial community offers a unique opportunity for assessment of anthropogenic perturbations in these environments. The current study used targeting of 16S rRNA and hzo genes to characterize the composition and structure of the anammox bacterial community in the sediments of the eutrophic Jiaozhou Bay, thereby unraveling their diversity, abundance, and distribution. Abundance and distribution of hzo genes revealed a greater taxonomic diversity in Jiaozhou Bay, including several novel clades of anammox bacteria. In contrast, the targeting of 16S rRNA genes verified the presence of only "Candidatus Scalindua," albeit with a high microdiversity. The genus "Ca. Scalindua" comprised the apparent majority of active sediment anammox bacteria. Multivariate statistical analyses indicated a heterogeneous distribution of the anammox bacterial assemblages in Jiaozhou Bay. Of all environmental parameters investigated, sediment organic C/organic N (OrgC/OrgN), nitrite concentration, and sediment median grain size were found to impact the composition, structure, and distribution of the sediment anammox bacterial community. Analysis of Pearson correlations between environmental factors and abundance of 16S rRNA and hzo genes as determined by fluorescent real-time PCR suggests that the local nitrite concentration is the key regulator of the abundance of anammox bacteria in Jiaozhou Bay sediments.

摘要

细菌厌氧氨氧化 (anammox) 是海洋氮循环中的一个重要过程。由于沿海海湾的持续富营养化对低氧区的形成有重大贡献,因此监测 anammox 细菌群落为评估这些环境中的人为干扰提供了一个独特的机会。本研究利用 16S rRNA 和 hzo 基因的靶向性,对富营养化胶州湾沉积物中的 anammox 细菌群落的组成和结构进行了特征描述,从而揭示了它们的多样性、丰度和分布。hzo 基因的丰度和分布揭示了胶州湾具有更高的分类多样性,包括几个新的 anammox 细菌分支。相比之下,16S rRNA 基因的靶向性仅证实了“Candidatus Scalindua”的存在,尽管具有很高的微多样性。“Ca. Scalindua”属构成了明显的活性沉积物 anammox 细菌的主要部分。多元统计分析表明,胶州湾的 anammox 细菌组合具有异质的分布。在所研究的所有环境参数中,沉积物有机碳/有机氮 (OrgC/OrgN)、亚硝酸盐浓度和沉积物中值粒径被发现影响沉积物 anammox 细菌群落的组成、结构和分布。通过荧光实时 PCR 分析环境因子与 16S rRNA 和 hzo 基因丰度之间的 Pearson 相关性表明,当地亚硝酸盐浓度是胶州湾沉积物中 anammox 细菌丰度的关键调节因子。