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卷曲蛋白丝中α-螺旋到β-折叠转变的分子动力学模拟:对临界丝长度尺度的证据。

Molecular dynamics simulation of the α-helix to β-sheet transition in coiled protein filaments: evidence for a critical filament length scale.

机构信息

Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue Room 1-235A&B, Cambridge, Massachusetts 02139, USA.

出版信息

Phys Rev Lett. 2010 May 14;104(19):198304. doi: 10.1103/PhysRevLett.104.198304. Epub 2010 May 12.

DOI:10.1103/PhysRevLett.104.198304
PMID:20867006
Abstract

The alpha-helix to beta-sheet transition (α-β transition) is a universal deformation mechanism in alpha-helix rich protein materials such as wool, hair, hoof, and cellular proteins. Through a combination of molecular and theoretical modeling, we examine the behavior of alpha-helical coiled-coil proteins with varying lengths under stretch. We find that the occurrence of the α-β transition is controlled by the length of constituting alpha-helical proteins. In the asymptotic limit, short proteins with less than 26 amino acids or 3.8 nm length reveal interprotein sliding, whereas proteins with greater lengths feature an α-β transition, leading to a significant increase in the protein's stiffness, strength, and energy dissipation capacity at large deformation. Our study elucidates the fundamental physics of this mechanism and explains why the α-β transition typically occurs in protein filaments with long alpha-helical domains.

摘要

α-螺旋到β-折叠的转变(α-β 转变)是富含α-螺旋的蛋白质材料(如羊毛、头发、蹄和细胞蛋白)中的一种普遍变形机制。通过分子和理论建模的结合,我们研究了在拉伸下具有不同长度的α-螺旋卷曲螺旋蛋白的行为。我们发现,α-β 转变的发生受组成α-螺旋蛋白长度的控制。在渐近极限下,长度小于 26 个氨基酸或 3.8nm 的短蛋白质会发生蛋白间滑动,而较长的蛋白质则会发生 α-β 转变,导致蛋白质在大变形时的刚度、强度和能量耗散能力显著增加。我们的研究阐明了这一机制的基础物理学,并解释了为什么α-β 转变通常发生在具有长α-螺旋结构域的蛋白质纤维中。

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