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Taq聚合酶含有来源不明的细菌DNA。

Taq polymerase contains bacterial DNA of unknown origin.

作者信息

Rand K H, Houck H

机构信息

Department of Pathology, University of Florida, Gainesville.

出版信息

Mol Cell Probes. 1990 Dec;4(6):445-50. doi: 10.1016/0890-8508(90)90003-i.

DOI:10.1016/0890-8508(90)90003-i
PMID:2087233
Abstract

The polymerase chain reaction (PCR) was carried out with the highly conserved E. coli ribosomal RNA gene sequences 1376-1395 and 1521-1540. Using these primers and reaction conditions specified by the manufacturer(s), a 165 bp fragment was synthesized using Taq polymerase from three different sources in the absence of any added template. Restriction enzyme analysis suggests the source of this bacterial DNA is neither E. coli nor Thermus aquaticus. A variety of different methods to eliminate it such as treatment with DNase, restriction enzyme digestion, and CsCl2 density gradient centrifugation were unsuccessful. Since the bacteria in which the Taq polymerase is produced are not the source of the DNA, some step(s) in the purification or reagents added to the enzyme must be involved. Thus it is likely other biological products are similarly contaminated. Although the problem is easily dealt with by running a no-template control and choosing other primers if a problem exists, it is important to recognize the potential for a false-positive result.

摘要

采用高度保守的大肠杆菌核糖体RNA基因序列1376 - 1395和1521 - 1540进行聚合酶链反应(PCR)。使用这些引物以及制造商指定的反应条件,在未添加任何模板的情况下,利用来自三种不同来源的Taq聚合酶合成了一个165 bp的片段。限制性内切酶分析表明,这种细菌DNA的来源既不是大肠杆菌也不是嗜热水生栖热菌。多种不同的消除方法,如用DNase处理、限制性内切酶消化和CsCl2密度梯度离心均未成功。由于生产Taq聚合酶的细菌不是DNA的来源,那么酶的纯化过程中的某些步骤或添加到酶中的试剂必定与此有关。因此,其他生物制品可能同样受到污染。尽管通过进行无模板对照以及在存在问题时选择其他引物,这个问题很容易解决,但认识到出现假阳性结果的可能性很重要。

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1
Taq polymerase contains bacterial DNA of unknown origin.Taq聚合酶含有来源不明的细菌DNA。
Mol Cell Probes. 1990 Dec;4(6):445-50. doi: 10.1016/0890-8508(90)90003-i.
2
[Cloning of the gene for thermostable Thermus aquaticus YT1 DNA polymerase and its expression in Escherichia coli].[嗜热水生栖热菌YT1耐热DNA聚合酶基因的克隆及其在大肠杆菌中的表达]
Mol Biol (Mosk). 1993 Sep-Oct;27(5):1100-12.
3
Characterization of contaminating DNA in Taq polymerase which occurs during amplification with a primer set for Legionella 5S ribosomal RNA.用嗜肺军团菌5S核糖体RNA引物组扩增过程中Taq聚合酶中污染DNA的特性分析
Mol Cell Probes. 1994 Feb;8(1):11-4. doi: 10.1006/mcpr.1994.1002.
4
Template secondary structure can increase the error frequency of the DNA polymerase from Thermus aquaticus.模板二级结构会增加嗜热水生栖热菌DNA聚合酶的错误频率。
Gene. 1995 Oct 16;164(1):59-63. doi: 10.1016/0378-1119(95)00383-h.
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Cloning and overexpression of thermostable DNA polymerase gene in Escherichia coli.耐热DNA聚合酶基因在大肠杆菌中的克隆与过表达
Chin J Biotechnol. 1995;11(3):185-91.
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Identification and elimination of DNA sequences in Taq DNA polymerase.Taq DNA聚合酶中DNA序列的鉴定与去除。
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Heterogeneity of primer extension products in asymmetric PCR is due both to cleavage by a structure-specific exo/endonuclease activity of DNA polymerases and to premature stops.不对称PCR中引物延伸产物的异质性既归因于DNA聚合酶的结构特异性外切/内切核酸酶活性的切割,也归因于过早终止。
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Purification of Thermus aquaticus DNA polymerase expressed in Escherichia coli.在大肠杆菌中表达的嗜热水生栖热菌DNA聚合酶的纯化。
Anal Biochem. 1990 Dec;191(2):396-400. doi: 10.1016/0003-2697(90)90238-5.

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