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[人参(五加科)基因组的RAPD、ISSR和AFLP标记多态性]

[Polymorphism of RAPD, ISSR and AFLP markers of the Panax ginseng C. A. Meyer (Araliaceae) genome].

作者信息

Reunova G D, Kats I L, Muzarok T I, Zhuravlev Iu N

出版信息

Genetika. 2010 Aug;46(8):1057-66.

PMID:20873202
Abstract

The genus Panax (Araliaceae) is world-famous because many its members have important medicinal properties. Panax ginseng C. A. Meyer is more popular than other species of the genus because remedies prepared from this plant stimulate immunity, help to prevent diseases, and have antistress effects. In addition, the ginseng root extract is traditionally used as a means against aging. At present, this species is found in the wild only in Primorsky krai, Russia, but its populations are extremely exhausted and need to be restored. In this study, effectiveness of molecular DNA markers in detecting genetic variation and differentiation of the ginseng populations was tested. Genetic variation of ginseng, identified using RAPD (P = 4%; H(pop) = 0.0130) and ISSR (P = 9.3%; H(pop) = 0.0139) markers was low. The AFLP* approach, according to which amplicons are separated in polyacrylamide gel and visualized by means of silver staining, showed somewhat higher variability (P = 21.8%; H(pop) = 0.0509), while its effectiveness in population differentiation was as low as that of RAPD and ISSR. The AFLP** technique, which included analysis of the fragments using genetic analyzer, revealed high genetic differentiation of ginseng (P = 94.4%; H(pop) = 0.3246). All populations examined using the AFLP** markers were statistically significantly differentiated based on the AMOVA results. Our result suggest effectiveness of AFLP** markers for characterization of the genetic structure and genetic relationships of the ginseng populations. These markers are recommended for use in large-scale population genetic studies of this species to develop measures of its conservation.

摘要

人参属(五加科)举世闻名,因为其许多成员都具有重要的药用特性。人参(Panax ginseng C. A. Meyer)比该属的其他物种更受欢迎,因为用这种植物制成的药物能增强免疫力、预防疾病并具有抗应激作用。此外,人参根提取物传统上被用作抗衰老手段。目前,该物种仅在俄罗斯滨海边疆区的野外被发现,但其种群极度枯竭,需要恢复。在本研究中,测试了分子DNA标记在检测人参种群遗传变异和分化方面的有效性。用人参鉴定出的遗传变异,使用RAPD(P = 4%;H(pop)=0.0130)和ISSR(P = 9.3%;H(pop)=0.0139)标记较低。AFLP*方法是将扩增子在聚丙烯酰胺凝胶中分离并通过银染可视化,其显示出稍高的变异性(P = 21.8%;H(pop)=0.0509),而其在种群分化中的有效性与RAPD和ISSR一样低。AFLP技术包括使用遗传分析仪对片段进行分析,揭示了人参的高遗传分化(P = 94.4%;H(pop)=0.3246)。根据AMOVA结果,使用AFLP标记检测的所有种群在统计学上都有显著差异。我们的结果表明AFLP**标记在表征人参种群的遗传结构和遗传关系方面是有效的。建议在该物种的大规模种群遗传学研究中使用这些标记,以制定其保护措施。

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