Institute for Mathematical Sciences, Imperial College London, London, United Kingdom.
PLoS One. 2010 Sep 23;5(9):e12951. doi: 10.1371/journal.pone.0012951.
Standard epidemiological theory claims that in structured populations competition between multiple pathogen strains is a deterministic process which is mediated by the basic reproduction number (R0) of the individual strains. A new theory based on analysis, simulation and empirical study challenges this predictor of success.
We show that the quantity R0 is a valid predictor in structured populations only when size is infinite. In this article we show that when population size is finite the dynamics of infection by multi-strain pathogens is a stochastic process whose outcome can be predicted by evolutionary entropy, S, an information theoretic measure which describes the uncertainty in the infectious age of an infected parent of a randomly chosen new infective. Evolutionary entropy characterises the demographic stability or robustness of the population of infectives. This statistical parameter determines the duration of infection and thus provides a quantitative index of the pathogenicity of a strain. Standard epidemiological theory based on R0 as a measure of selective advantage is the limit as the population size tends to infinity of the entropic selection theory. The standard model is an approximation to the entropic selection theory whose validity increases with population size.
An epidemiological analysis based on entropy is shown to explain empirical observations regarding the emergence of less pathogenic strains of human influenza during the antigenic drift phase. Furthermore, we exploit the entropy perspective to discuss certain epidemiological patterns of the current H1N1 swine flu outbreak.
标准的流行病学理论声称,在结构种群中,多种病原体菌株之间的竞争是一个由个体菌株的基本繁殖数(R0)介导的确定性过程。一种基于分析、模拟和实证研究的新理论挑战了这一成功预测因素。
我们表明,只有在种群大小无穷大时,R0 数量才是结构种群中一个有效的预测因子。在本文中,我们表明,当种群大小时,多菌株病原体感染的动力学是一个随机过程,其结果可以通过进化熵(S)来预测,S 是一种信息论度量,它描述了随机选择的新传染性个体的感染性父母的感染年龄的不确定性。进化熵描述了传染性个体种群的人口统计学稳定性或稳健性。这个统计参数决定了感染的持续时间,从而为菌株的致病性提供了一个定量指标。基于 R0 作为选择优势度量的标准流行病学理论是当种群大小趋于无穷大时的熵选择理论的极限。标准模型是熵选择理论的一个近似,其有效性随着种群大小的增加而增加。
基于熵的流行病学分析表明,它可以解释在抗原漂移阶段人类流感的致病性较弱菌株出现的经验观察结果。此外,我们利用熵的观点来讨论当前 H1N1 猪流感爆发的某些流行病学模式。