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RNA肿瘤病毒的基因组结构。I. 全长单链和双链病毒DNA转录本的体外合成。

Genome organization of RNA tumor viruses. I. In vitro synthesis of full-genome-length single-stranded and double-stranded viral DNA transcripts.

作者信息

Verma I M

出版信息

J Virol. 1978 Jun;26(3):615-29. doi: 10.1128/JVI.26.3.615-629.1978.

DOI:10.1128/JVI.26.3.615-629.1978
PMID:209213
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC525887/
Abstract

Genome-length complementary DNA (cDNA) transcripts were synthesized in vitro by using purified virions of avian myeloblastosis virus. Moloney murine leukemia virus, and clone 124 mouse sarcoma virus. The size of the genomelenth cDNA transcripts was measured on either alkaline sucrose gradients or alkaline agarose gels. The longest cDNA transcripts synthesized by using avian myeloblastosis virus, Moloney murine leukemia virus, and clone 124 mouse sarcoma virus were 7, 9 and 6 kilobases (kb), respectively. The in vitro system used was capable of synthesizing double-stranded DNA, but the plus strands (same polarity as the viral RNA) were only 0.5 to 1.5 kb long. Lone Moloney murine leukemia virus cDNA transcripts were used as templates to synthesize the second plus strand. Essentially two strategies were employed as follows. (i) The 3' ends of the cDNA transcripts were extended by addition of 50 to 100 dAMP residues by terminal deoxynucleotidyl transferase. The (dA)n-tailed cDNA transcripts were used as templates along with an oligomer of dT as primer and Escherichia coli DNA polymerase to synthesize the plus strands. (ii) DNase-digested calf thymus DNA was used to prime the synthesis of plus strands on long cDNA with E. coli DNA polymerase I. In both cases, the synthesis of the plus strands was monitored by increased resistance of the cDNA templates to single-strand-specific S1 nuclease. The double-stranded DNA was fractionated on neutral sucrose gradients. Analysis of the double-stranded DNA synthesized by using oligo(dT) primer showed the plus strands to be about 5 to 6 kb long, whereas the plus strands synthesized by using DNase-digested calf thymus DNA primers were only 0.3 to 0.5 kb long. Double-stranded DNA synthesized by either method has an average size of 6 x 10(6) daltons. Double-stranded DNA was also synthesized by using cDNA transcripts as templates without the addition of any primers. In this case, the plus strands were covalently linked to the template strand and were not representative of the whole parent strand.

摘要

利用禽成髓细胞瘤病毒、莫洛尼鼠白血病病毒和124克隆小鼠肉瘤病毒的纯化病毒粒子在体外合成基因组长度的互补DNA(cDNA)转录本。在碱性蔗糖梯度或碱性琼脂糖凝胶上测定基因组长度cDNA转录本的大小。利用禽成髓细胞瘤病毒、莫洛尼鼠白血病病毒和124克隆小鼠肉瘤病毒合成的最长cDNA转录本分别为7、9和6千碱基(kb)。所使用的体外系统能够合成双链DNA,但正链(与病毒RNA极性相同)仅0.5至1.5 kb长。单独的莫洛尼鼠白血病病毒cDNA转录本用作模板来合成第二条正链。基本上采用了以下两种策略。(i)通过末端脱氧核苷酸转移酶添加50至100个dAMP残基来延伸cDNA转录本的3'末端。以(dA)n尾化的cDNA转录本为模板,与dT寡聚物作为引物以及大肠杆菌DNA聚合酶一起合成正链。(ii)用脱氧核糖核酸酶消化的小牛胸腺DNA作为引物,用大肠杆菌DNA聚合酶I在长cDNA上合成正链。在这两种情况下,通过cDNA模板对单链特异性S1核酸酶抗性的增加来监测正链的合成。双链DNA在中性蔗糖梯度上进行分级分离。对使用寡聚(dT)引物合成的双链DNA的分析表明,正链约5至6 kb长,而使用脱氧核糖核酸酶消化的小牛胸腺DNA引物合成的正链仅0.3至0.5 kb长。通过任何一种方法合成的双链DNA的平均大小为6×10⁶道尔顿。也使用cDNA转录本作为模板不添加任何引物来合成双链DNA。在这种情况下,正链与模板链共价连接,并不代表整个亲本链。

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本文引用的文献

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A crude nuclease preparation suitable for use in DNA reassociation experiments.一种适用于DNA重缔合实验的粗制核酸酶制剂。
Biochim Biophys Acta. 1971 Jul 29;240(4):522-31. doi: 10.1016/0005-2787(71)90709-x.
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Characterization of the oncogene (erb) of avian erythroblastosis virus and its cellular progenitor.禽成红细胞增多症病毒癌基因(erb)及其细胞起源的特征分析。
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Synthesis of plus strands of retroviral DNA in cells infected with avian sarcoma virus and mouse mammary tumor virus.在感染禽肉瘤病毒和小鼠乳腺肿瘤病毒的细胞中逆转录病毒DNA正链的合成。
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Viral DNA synthesized in vitro by avian retrovirus particles permeabilized with melittin. I. Kinetics of synthesis and size of minus- and plus-strand transcripts.蜂毒肽通透处理的禽逆转录病毒颗粒在体外合成的病毒DNA。I. 负链和正链转录本的合成动力学及大小
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通过有限蛋白酶解选择性去除大肠杆菌B中脱氧核糖核酸聚合酶的核酸外切酶活性。
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Measurement of the sequence complexity of cloned Moloney murine leukemia virus 60 to 70S RNA: evidence for a haploid genome.克隆的莫洛尼鼠白血病病毒60至70S RNA序列复杂性的测定:单倍体基因组的证据。
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Gel electrophoresis of avian leukosis and sarcoma viral RNA in formamide: comparison with other viral and cellular RNA species.禽白血病和肉瘤病毒RNA在甲酰胺中的凝胶电泳:与其他病毒和细胞RNA种类的比较
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Complementarity between Rous sarcoma virus (RSV) RNA and the in vitro-synthesized DNA of the virus-associated DNA polymerase.劳氏肉瘤病毒(RSV)RNA与病毒相关DNA聚合酶的体外合成DNA之间的互补性。
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Purification of the RNA-directed DNA polymerase from avian myeloblastosis virus and its assay with polynucleotide templates.从禽成髓细胞瘤病毒中纯化RNA指导的DNA聚合酶及其用多核苷酸模板进行的测定。
Methods Enzymol. 1974;29:125-30. doi: 10.1016/0076-6879(74)29015-3.