• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于 Lolium-Festuca 种复合体的分子系统发育推断高羊茅形态型的进化历史。

Evolutionary history of tall fescue morphotypes inferred from molecular phylogenetics of the Lolium-Festuca species complex.

机构信息

Department of Primary Industries, Biosciences Research Division, Victorian AgriBiosciences Centre, 1 Park Drive, La Trobe University Research and Development Park, Bundoora, Victoria 3083, Australia.

出版信息

BMC Evol Biol. 2010 Oct 12;10:303. doi: 10.1186/1471-2148-10-303.

DOI:10.1186/1471-2148-10-303
PMID:20937141
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2958922/
Abstract

BACKGROUND

The agriculturally important pasture grass tall fescue (Festuca arundinacea Schreb. syn. Lolium arundinaceum (Schreb.) Darbysh.) is an outbreeding allohexaploid, that may be more accurately described as a species complex consisting of three major (Continental, Mediterranean and rhizomatous) morphotypes. Observation of hybrid infertility in some crossing combinations between morphotypes suggests the possibility of independent origins from different diploid progenitors. This study aims to clarify the evolutionary relationships between each tall fescue morphotype through phylogenetic analysis using two low-copy nuclear genes (encoding plastid acetyl-CoA carboxylase [Acc1] and centroradialis [CEN]), the nuclear ribosomal DNA internal transcribed spacer (rDNA ITS) and the chloroplast DNA (cpDNA) genome-located matK gene. Other taxa within the closely related Lolium-Festuca species complex were also included in the study, to increase understanding of evolutionary processes in a taxonomic group characterised by multiple inter-specific hybridisation events.

RESULTS

Putative homoeologous sequences from both nuclear genes were obtained from each polyploid species and compared to counterparts from 15 diploid taxa. Phylogenetic reconstruction confirmed F. pratensis and F. arundinacea var. glaucescens as probable progenitors to Continental tall fescue, and these species are also likely to be ancestral to the rhizomatous morphotype. However, these two morphotypes are sufficiently distinct to be located in separate clades based on the ITS-derived data set. All four of the generated data sets suggest independent evolution of the Mediterranean and Continental morphotypes, with minimal affinity between cognate sequence haplotypes. No obvious candidate progenitor species for Mediterranean tall fescues were identified, and only two putative sub-genome-specific haplotypes were identified for this morphotype.

CONCLUSIONS

This study describes the first phylogenetic analysis of the Festuca genus to include representatives of each tall fescue morphotype, and to use low copy nuclear gene-derived sequences to identify putative progenitors of the polyploid species. The demonstration of distinct tall fescue lineages has implications for both taxonomy and molecular breeding strategies, and may facilitate the generation of morphotype and/or sub-genome-specific molecular markers.

摘要

背景

农业上重要的牧草高羊茅(Festuca arundinacea Schreb. syn. Lolium arundinaceum (Schreb.) Darbysh.)是一种异花授粉的六倍体,更准确地说,它可能是一个由三个主要形态型(大陆型、地中海型和根茎型)组成的物种复合体。观察到某些形态型之间的杂交不育性表明,它们可能是由不同的二倍体祖先独立起源的。本研究旨在通过使用两个低拷贝核基因(编码质体乙酰辅酶 A 羧化酶[Acc1]和中辐[CEN])、核核糖体 DNA 内转录间隔区(rDNA ITS)和叶绿体 DNA(cpDNA)基因组定位的 matK 基因对每个高羊茅形态型进行系统发育分析,以阐明它们之间的进化关系。研究还包括亲缘关系密切的Lolium-Festuca 种复合体中的其他分类群,以增加对一个以多种种间杂交事件为特征的分类群进化过程的理解。

结果

从每个多倍体物种中获得了两个核基因的假定同源序列,并与 15 个二倍体分类群的对应序列进行了比较。系统发育重建证实,F. pratensis 和 F. arundinacea var. glaucescens 可能是大陆型高羊茅的祖先,这两个物种也可能是根茎型的祖先。然而,基于 ITS 衍生数据集,这两个形态型足够独特,可以位于不同的分支中。四个生成的数据集中都表明地中海型和大陆型形态型是独立进化的,同源序列单倍型之间的亲和力最小。没有明显的候选祖先物种被确定为地中海型高羊茅的起源,并且仅为这个形态型鉴定出两个假定的亚基因组特异性单倍型。

结论

本研究首次对高羊茅的每个形态型进行了 Festuca 属的系统发育分析,并使用低拷贝核基因衍生序列来鉴定多倍体物种的可能祖先。对高羊茅不同谱系的证明对分类学和分子育种策略都有影响,并可能有助于产生形态型和/或亚基因组特异性分子标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/3bd2d1030534/1471-2148-10-303-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/f283020d0e7d/1471-2148-10-303-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/d5574d7007b7/1471-2148-10-303-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/6487cdabbf2c/1471-2148-10-303-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/3bd2d1030534/1471-2148-10-303-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/f283020d0e7d/1471-2148-10-303-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/d5574d7007b7/1471-2148-10-303-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/6487cdabbf2c/1471-2148-10-303-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cd0/2958922/3bd2d1030534/1471-2148-10-303-4.jpg

相似文献

1
Evolutionary history of tall fescue morphotypes inferred from molecular phylogenetics of the Lolium-Festuca species complex.基于 Lolium-Festuca 种复合体的分子系统发育推断高羊茅形态型的进化历史。
BMC Evol Biol. 2010 Oct 12;10:303. doi: 10.1186/1471-2148-10-303.
2
Molecular characterisation and interpretation of genetic diversity within globally distributed germplasm collections of tall fescue (Festuca arundinacea Schreb.) and meadow fescue (F. pratensis Huds.).全球分布的高羊茅(Festuca arundinacea Schreb.)和草地羊茅(F. pratensis Huds.)种质资源中遗传多样性的分子特征和解释。
Theor Appl Genet. 2012 Apr;124(6):1127-37. doi: 10.1007/s00122-011-1774-6. Epub 2012 Jan 6.
3
Molecular discrimination of tall fescue morphotypes in association with Festuca relatives.与羊茅属近缘种相关的高羊茅形态型的分子鉴别
PLoS One. 2018 Jan 17;13(1):e0191343. doi: 10.1371/journal.pone.0191343. eCollection 2018.
4
Dig up tall fescue plastid genomes for the identification of morphotype-specific DNA variants.挖掘高羊茅质体基因组,以鉴定形态型特异性 DNA 变异。
BMC Genomics. 2023 Oct 3;24(1):586. doi: 10.1186/s12864-023-09631-8.
5
Genome-wide SNP identification in multiple morphotypes of allohexaploid tall fescue (Festuca arundinacea Schreb).在多倍体高羊茅(Festuca arundinacea Schreb)的多种形态型中进行全基因组 SNP 鉴定。
BMC Genomics. 2012 Jun 6;13:219. doi: 10.1186/1471-2164-13-219.
6
Chromosome pairing of individual genomes in tall fescue (Festuca arundinacea Schreb.), its progenitors, and hybrids with Italian ryegrass (Lolium multiflorum Lam.).高羊茅(Festuca arundinacea Schreb.)及其祖先以及与多花黑麦草(Lolium multiflorum Lam.)杂交种的个体基因组染色体配对
Cytogenet Genome Res. 2009;124(2):170-8. doi: 10.1159/000207525. Epub 2009 May 5.
7
Phylogenomics of fescue grass-derived fungal endophytes based on selected nuclear genes and the mitochondrial gene complement.基于选定核基因和线粒体基因组成的羊茅内生真菌的系统基因组学研究。
BMC Evol Biol. 2013 Dec 12;13:270. doi: 10.1186/1471-2148-13-270.
8
Plastome Sequence Determination and Comparative Analysis for Members of the Lolium-Festuca Grass Species Complex.拟南芥质体基因组序列测定与比较分析。
G3 (Bethesda). 2013 Apr 9;3(4):607-616. doi: 10.1534/g3.112.005264.
9
Intergeneric somatic hybridization in Gramineae: somatic hybrid plants between tall fescue (Festuca arundinacea Schreb.) and Italian ryegrass (Lolium multiflorum Lam.).禾本科属间体细胞杂交:高羊茅(Festuca arundinacea Schreb.)与多花黑麦草(Lolium multiflorum Lam.)之间的体细胞杂种植物。
Mol Gen Genet. 1991 Dec;231(1):1-6. doi: 10.1007/BF00293814.
10
Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages.对代表不同非生物胁迫、组织类型和发育阶段的高羊茅ESTs进行分析。
BMC Plant Biol. 2008 Mar 4;8:27. doi: 10.1186/1471-2229-8-27.

引用本文的文献

1
Dig up tall fescue plastid genomes for the identification of morphotype-specific DNA variants.挖掘高羊茅质体基因组,以鉴定形态型特异性 DNA 变异。
BMC Genomics. 2023 Oct 3;24(1):586. doi: 10.1186/s12864-023-09631-8.
2
Host Genetic Background Effect on Vertical Seed Transmission of Epichloë Endophyte Strains in Tall Fescue.宿主遗传背景对高羊茅内生真菌菌株垂直种子传播的影响。
Microb Ecol. 2023 Nov;86(4):2618-2626. doi: 10.1007/s00248-023-02270-2. Epub 2023 Jul 20.
3
Plant functional trait responses to cope with drought in seven cool-season grasses.

本文引用的文献

1
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.系统发育树的置信区间:一种使用自展法的方法。
Evolution. 1985 Jul;39(4):783-791. doi: 10.1111/j.1558-5646.1985.tb00420.x.
2
Variation of genome size and organization within hexaploid Festuca arundinacea.六倍体羊茅基因组大小和组织的变异。
Theor Appl Genet. 1992 Jan;83(3):273-8. doi: 10.1007/BF00224271.
3
Phylogeny of tall fescue and related species using RFLPs.利用 RFLPs 研究高羊茅及其相关物种的系统发育。
七种冷季型禾草对干旱的适应功能性状响应
Sci Rep. 2023 Mar 31;13(1):5285. doi: 10.1038/s41598-023-31923-y.
4
Transcriptomic profiling revealed the role of 24-epibrassinolide in alleviating salt stress damage in tall fescue ().转录组分析揭示了24-表油菜素内酯在缓解高羊茅盐胁迫损伤中的作用。
Front Plant Sci. 2022 Sep 22;13:976341. doi: 10.3389/fpls.2022.976341. eCollection 2022.
5
Distribution patterns of rDNA loci in the - complex (Poaceae).禾本科β-复合体中核糖体DNA位点的分布模式
Comp Cytogenet. 2022 Mar 24;16(1):39-54. doi: 10.3897/compcytogen.v16.i1.79056. eCollection 2022.
6
A Systematic Review on the Effects of Fungal Endophytes on Drought Tolerance in Cool-Season Grasses.真菌内生菌对冷季型草坪草耐旱性影响的系统综述
Front Plant Sci. 2021 Mar 24;12:644731. doi: 10.3389/fpls.2021.644731. eCollection 2021.
7
Molecular Phylogenetics and Micromorphology of Australasian Stipeae (Poaceae, Subfamily Pooideae), and the Interrelation of Whole-Genome Duplication and Evolutionary Radiations in This Grass Tribe.澳大利亚针茅族(禾本科,早熟禾亚科)的分子系统发育与微观形态,以及该禾本科族中全基因组复制与进化辐射的相互关系
Front Plant Sci. 2021 Jan 22;11:630788. doi: 10.3389/fpls.2020.630788. eCollection 2020.
8
Mapping QTL for summer dormancy related traits in tall fescue (Festuca arundinacea Schreb.).定位高羊茅夏季休眠相关性状的 QTL。
Sci Rep. 2020 Sep 3;10(1):14539. doi: 10.1038/s41598-020-71488-8.
9
Chromosome Pairing in Polyploid Grasses.多倍体禾本科植物中的染色体配对
Front Plant Sci. 2020 Jul 9;11:1056. doi: 10.3389/fpls.2020.01056. eCollection 2020.
10
Comparative analyses of DNA repeats and identification of a novel Fesreba centromeric element in fescues and ryegrasses.比较分析 DNA 重复序列和鉴定羊茅属和黑麦草属中的新型 Fesreba 着丝粒元件。
BMC Plant Biol. 2020 Jun 17;20(1):280. doi: 10.1186/s12870-020-02495-0.
Theor Appl Genet. 1994 Aug;88(6-7):685-90. doi: 10.1007/BF01253971.
4
The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group.龟兔赛跑:在一个新近分化的植物类群中,选择非编码质体基因组和核 Adh 序列进行系统发育重建。
Am J Bot. 1998 Sep;85(9):1301-15.
5
Genome sequencing and analysis of the model grass Brachypodium distachyon.拟南芥基因组测序和分析。
Nature. 2010 Feb 11;463(7282):763-8. doi: 10.1038/nature08747.
6
Making a functional diploid: from polysomic to disomic inheritance.制造功能二倍体:从多倍体到二倍体遗传。
New Phytol. 2010 Apr;186(1):113-22. doi: 10.1111/j.1469-8137.2009.03117.x. Epub 2009 Dec 16.
7
Phylogeny and evolutionary history of Leymus (Triticeae; Poaceae) based on a single-copy nuclear gene encoding plastid acetyl-CoA carboxylase.基于编码质体乙酰辅酶A羧化酶的单拷贝核基因的赖草属(小麦族;禾本科)系统发育与进化史
BMC Evol Biol. 2009 Oct 8;9:247. doi: 10.1186/1471-2148-9-247.
8
A DNA barcode for land plants.一种用于陆地植物的DNA条形码。
Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12794-7. doi: 10.1073/pnas.0905845106. Epub 2009 Jul 30.
9
Functional analysis of FT and TFL1 orthologs from orchid (Oncidium Gower Ramsey) that regulate the vegetative to reproductive transition.对调控营养生长向生殖生长转变的兰花(文心兰戈氏拉姆齐)中FT和TFL1直系同源基因的功能分析。
Plant Cell Physiol. 2009 Aug;50(8):1544-57. doi: 10.1093/pcp/pcp099. Epub 2009 Jul 1.
10
Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes.追踪草莓属(草莓)多倍体的进化历史:来自低拷贝核基因系统发育分析的新见解
Mol Phylogenet Evol. 2009 Jun;51(3):515-30. doi: 10.1016/j.ympev.2008.12.024. Epub 2009 Jan 4.