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水生莱茵海姆菌,一种从淡水养殖池塘中分离到的具有抗菌活性的细菌。

Rheinheimera aquatica sp. nov., an antimicrobial activity producing bacterium isolated from freshwater culture pond.

机构信息

Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd. Nan-Tzu, Kaohsiung City 811, Taiwan.

出版信息

J Microbiol Biotechnol. 2010 Oct;20(10):1386-92. doi: 10.4014/jmb.1004.04048.

Abstract

A bacterial strain designated GR5(T) was isolated from freshwater culture pond in Taiwan during the screening of bacteria for antimicrobial compounds and characterized using the polyphasic taxonomic approach. Strain GR5(T) was Gram-negative, aerobic, greenish-yellow colored, rod-shaped, and motile by means of a polar single flagellum. Growth occurred at 10-40 degrees C (optimum, 35 degrees C), at pH 7.0-8.0 (optimum pH 8.0) and with 0-2.0% NaCl (optimum, 0.5-1.0%). The major fatty acids were C(16:1) omega7c (36.3%), C(16:0) (16.6%), C(12:0) 3-OH (12.5%) and C(18:1) omega7c (9.1%). The major respiratory quinone was Q-8. The DNA G+C content of the genomic DNA was 51.9 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain GR5(T) belonged to the genus Rheinheimera and its most closely neighbours were Rheinheimera texasensis A62-14B(T) and Rheinheimera tangshanensis JA3-B52(T) with sequence similarities of 98.1 and 97.5%, respectively. The sequence similarities to any other recognized species within Gammaproteobacteria were less than 96.5%. The mean level of DNA-DNA relatedness between strain GR5(T) and R. texasensis A62-14B(T), the strain most closely related to the isolate, was 26.5 +/- 7.6 %. On the basis of the phylogenetic and phenotypic data, strain GR5(T) should be classified as representing a novel species, for which the name Rheinheimera aquatica sp. nov. is proposed. The type strain is GR5(T) (= BCRC 80081(T) = LMG 25379(T)).

摘要

一株被命名为 GR5(T) 的细菌菌株是在台湾淡水养殖池塘中筛选具有抗菌化合物的细菌时分离出来的,并采用多相分类方法进行了特征描述。GR5(T) 菌株为革兰氏阴性、需氧、绿黄色、杆状、通过极生单鞭毛运动。生长发生在 10-40°C(最佳温度为 35°C)、pH 值 7.0-8.0(最佳 pH 值 8.0)和 0-2.0%NaCl(最佳 0.5-1.0%)。主要脂肪酸为 C(16:1) omega7c(36.3%)、C(16:0)(16.6%)、C(12:0) 3-OH(12.5%)和 C(18:1) omega7c(9.1%)。主要呼吸醌为 Q-8。基因组 DNA 的 G+C 含量为 51.9 mol%。基于 16S rRNA 基因序列的系统发育分析表明,GR5(T) 菌株属于 Rheinheimera 属,其最接近的近缘种为 Rheinheimera texasensis A62-14B(T) 和 Rheinheimera tangshanensis JA3-B52(T),序列相似度分别为 98.1%和 97.5%。与 γ-变形菌纲中任何其他公认的种的序列相似度均小于 96.5%。GR5(T) 菌株与最接近的近缘种 Rheinheimera texasensis A62-14B(T) 之间的 DNA-DNA 相关平均水平为 26.5 +/- 7.6%。基于系统发育和表型数据,GR5(T) 菌株应归类为代表一个新种,建议将其命名为 Rheinheimera aquatica sp. nov.。模式菌株为 GR5(T)(=BCRC 80081(T)=LMG 25379(T))。

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