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活性细菌酪氨酸酶的首个结构揭示了铜的可变性。

First structures of an active bacterial tyrosinase reveal copper plasticity.

机构信息

Department of Biotechnology and Food Engineering, Technion-Israel Institute of Technology, Haifa 32000, Israel.

出版信息

J Mol Biol. 2011 Jan 7;405(1):227-37. doi: 10.1016/j.jmb.2010.10.048. Epub 2010 Oct 30.

Abstract

Tyrosinase is a member of the type 3 copper enzyme family that is involved in the production of melanin in a wide range of organisms. The crystal structures of a tyrosinase from Bacillus megaterium were determined at a resolution of 2.0-2.3 Å. The enzyme crystallized as a dimer in the asymmetric unit and was shown to be active in crystal. The overall monomeric structure is similar to that of the monomer of the previously determined tyrosinase from Streptomyces castaneoglobisporus, but it does not contain an accessory Cu-binding "caddie" protein. Two Cu(II) ions, serving as the major cofactors within the active site, are coordinated by six conserved histidine residues. However, determination of structures under different conditions shows varying occupancies and positions of the copper ions. This apparent mobility in copper binding modes indicates that there is a pathway by which copper is accumulated or lost by the enzyme. Additionally, we suggest that residues R209 and V218, situated in a second shell of residues surrounding the active site, play a role in substrate binding orientation based on their flexibility and position. The determination of a structure with the inhibitor kojic acid, the first tyrosinase structure with a bound ligand, revealed additional residues involved in the positioning of substrates in the active site. Comparison of wild-type structures with the structure of the site-specific variant R209H, which possesses a higher monophenolase/diphenolase activity ratio, lends further support to a previously suggested mechanism by which monophenolic substrates dock mainly to CuA.

摘要

酪氨酸酶是一种参与多种生物体内黑色素生成的 III 型铜酶家族成员。已经解析了来自巨大芽孢杆菌的酪氨酸酶的晶体结构,分辨率为 2.0-2.3Å。酶在不对称单位中以二聚体形式结晶,并在晶体中表现出活性。整体单体结构与先前确定的来自栗色链霉菌的酪氨酸酶的单体相似,但它不包含辅助 Cu 结合的“手推车”蛋白。两个 Cu(II)离子作为活性位点的主要辅因子,由六个保守的组氨酸残基配位。然而,在不同条件下确定结构表明铜离子的占有率和位置不同。这种铜结合模式的明显迁移性表明,酶存在一种途径,可以通过该途径积累或失去铜。此外,我们还提出,位于活性位点周围的第二残基壳中的残基 R209 和 V218 基于其灵活性和位置在底物结合方向上发挥作用。与抑制剂曲酸的结构测定,这是第一个具有结合配体的酪氨酸酶结构,揭示了在活性位点中定位底物的额外残基。野生型结构与具有更高单酚酶/二酚酶活性比的位点特异性变体 R209H 的结构的比较,进一步支持了先前提出的单酚底物主要与 CuA 对接的机制。

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