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二磷酸甘油酸变位酶磷酸酶活性的 2-磷酸甘油酸激活的分子见解。

Molecular insight into 2-phosphoglycolate activation of the phosphatase activity of bisphosphoglycerate mutase.

机构信息

Department of Pharmaceutical Chemistry, King Abdulaziz University, Alsulaymanyah, Jeddah 21589, Saudi Arabia.

Department of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, 800 East Leigh Street, Richmond, VA 23298, USA.

出版信息

Acta Crystallogr D Struct Biol. 2022 Apr 1;78(Pt 4):472-482. doi: 10.1107/S2059798322001802. Epub 2022 Mar 11.

Abstract

Bisphosphoglycerate mutase (BPGM) is an erythrocyte-specific multifunctional enzyme that is responsible for the regulation of 2,3-bisphosphoglycerate (2,3-BPG) in red blood cells through its synthase and phosphatase activities; the latter enzymatic function is stimulated by the endogenous activator 2-phosphoglycolate (2-PG). 2,3-BPG is a natural allosteric effector of hemoglobin (Hb) that is responsible for decreasing the affinity of Hb for oxygen to facilitate tissue oxygenation. Here, crystal structures of BPGM with 2-PG in the presence and absence of 3-phosphoglycerate are reported at 2.25 and 2.48 Å resolution, respectively. Structure analysis revealed a new binding site for 2-PG at the dimer interface for the first time, in addition to the expected active-site binding. Also, conformational non-equivalence of the two active sites was observed as one of the sites was found in an open conformation, with the residues at the active-site entrance, including Arg100, Arg116 and Arg117, and the C-terminus disordered. The kinetic result is consistent with the binding of 2-PG to an allosteric or noncatalytic site as well as the active site. This study paves the way for the rational targeting of BPGM for therapeutic purposes, especially for the treatment of sickle cell disease.

摘要

磷酸甘油变位酶(BPGM)是一种红细胞特异性多功能酶,通过其合成酶和磷酸酶活性负责调节红细胞中的 2,3-二磷酸甘油(2,3-BPG);后一种酶促功能受内源性激活剂 2-磷酸甘油(2-PG)的刺激。2,3-BPG 是血红蛋白(Hb)的天然变构效应物,负责降低 Hb 对氧的亲和力,以促进组织氧合。在此,报道了分别在存在和不存在 3-磷酸甘油条件下 BPGM 与 2-PG 的晶体结构,分辨率分别为 2.25 和 2.48Å。结构分析首次在二聚体界面上发现了 2-PG 的新结合位点,除了预期的活性位点结合外。此外,还观察到两个活性位点的构象不等效,因为一个位点处于开放构象,活性位点入口处的残基,包括 Arg100、Arg116 和 Arg117,以及 C 末端无序。动力学结果与 2-PG 结合到变构或非催化位点以及活性位点一致。这项研究为合理靶向 BPGM 用于治疗目的铺平了道路,特别是用于治疗镰状细胞病。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea98/8972806/13296dc42439/d-78-00472-fig1.jpg

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