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通过衔接域将底物和酶定位来提高界面生化反应速率。

Rate enhancement of an interfacial biochemical reaction through localization of substrate and enzyme by an adaptor domain.

机构信息

Department of Chemistry and Howard Hughes Medical Institute, The University of Chicago, Chicago, Illinois 60637, USA.

出版信息

J Phys Chem B. 2010 Nov 25;114(46):15113-8. doi: 10.1021/jp102820e. Epub 2010 Nov 3.

DOI:10.1021/jp102820e
PMID:21047083
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2987271/
Abstract

This paper describes a model system to characterize the rate enhancement that stems from localization of an enzyme with its substrate. The approach is based on a self-assembled monolayer that presents a substrate for the serine esterase cutinase along with a peptide ligand for an SH2 adaptor domain. The monolayer is treated with a fusion protein of cutinase and the SH2 domain, and the rate for the interfacial reaction is monitored using cyclic voltammetry. The rate is approximately 30-fold greater for monolayers that present the ligand for the SH2 domain than for those that omit the ligand. The rate enhancement is due to the interaction of the adaptor domain with the immobilized ligand. Further, the rate enhancement increases with the densities of both the ligand and the substrate. This example provides a well-defined model system for quantitatively assessing the magnitude of rate enhancement that is possible with colocalization of an enzyme with its substrate and may be particularly significant for understanding the signaling events that rely on enzyme localization at the cell membrane.

摘要

本文描述了一个模型系统,用于描述酶与其底物定位所带来的反应速率增强。该方法基于自组装单分子层,该单分子层呈现丝氨酸酯酶角质酶的底物以及 SH2 衔接子结构域的肽配体。用角质酶和 SH2 结构域的融合蛋白处理单层,并使用循环伏安法监测界面反应的速率。呈现 SH2 结构域配体的单层的反应速率比不呈现配体的单层的反应速率大约快 30 倍。这种速率增强是由于衔接子结构域与固定化配体的相互作用。此外,速率增强随配体和底物的密度增加而增加。该示例提供了一个明确的模型系统,用于定量评估酶与其底物共定位可能带来的反应速率增强的幅度,对于理解依赖于酶在细胞膜上定位的信号事件可能特别重要。

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本文引用的文献

1
An adaptor domain-mediated autocatalytic interfacial kinase reaction.衔接域介导的自催化界面激酶反应。
Chemistry. 2009 Nov 16;15(45):12303-9. doi: 10.1002/chem.200901345.
2
Synthetic protein scaffolds provide modular control over metabolic flux.合成蛋白质支架可对代谢通量进行模块化控制。
Nat Biotechnol. 2009 Aug;27(8):753-9. doi: 10.1038/nbt.1557. Epub 2009 Aug 2.
3
Mass spectrometry of self-assembled monolayers: a new tool for molecular surface science.自组装单分子层的质谱分析:分子表面科学的一种新工具。
多价催化剂作用于多价底物:表面控制反应性的模型。
Angew Chem Int Ed Engl. 2016 Oct 4;55(41):12643-9. doi: 10.1002/anie.201602797. Epub 2016 May 30.
4
Synthetic Protein Scaffolds Based on Peptide Motifs and Cognate Adaptor Domains for Improving Metabolic Productivity.基于肽基序和同源适配体结构域的合成蛋白支架,用于提高代谢产物的生成。
Front Bioeng Biotechnol. 2015 Nov 23;3:191. doi: 10.3389/fbioe.2015.00191. eCollection 2015.
5
Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria.第一种和最后一种酶的空间定位有效地连接了细菌中的活跃代谢途径。
BMC Syst Biol. 2014 Dec 14;8:131. doi: 10.1186/s12918-014-0131-1.
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Proteolytic activity at quantum dot-conjugates: kinetic analysis reveals enhanced enzyme activity and localized interfacial "hopping".量子点缀合物的蛋白水解活性:动力学分析揭示了增强的酶活性和局部界面“跳跃”。
Nano Lett. 2012 Jul 11;12(7):3793-802. doi: 10.1021/nl301727k. Epub 2012 Jun 25.
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High-throughput analysis of peptide-binding modules.高通量分析肽结合模块。
Proteomics. 2012 May;12(10):1527-46. doi: 10.1002/pmic.201100599.
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