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Variability and abundance of the epiphytic bacterial community associated with a green marine Ulvacean alga.与绿色海洋绿藻相关的附生细菌群落的变异性和丰度。
ISME J. 2010 Feb;4(2):301-11. doi: 10.1038/ismej.2009.107. Epub 2009 Oct 15.
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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.介绍 mothur:开源、独立于平台、社区支持的软件,用于描述和比较微生物群落。
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绿藻浒苔附生细菌群落的组成、独特性和变异性。

Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis.

机构信息

School of Biotechnology and Biomolecular Sciences, Centre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales, Australia.

出版信息

ISME J. 2011 Apr;5(4):590-600. doi: 10.1038/ismej.2010.164. Epub 2010 Nov 4.

DOI:10.1038/ismej.2010.164
PMID:21048801
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3105733/
Abstract

Green Ulvacean marine macroalgae are distributed worldwide in coastal tidal and subtidal ecosystems. As for many living surfaces in the marine environment, little is known concerning the epiphytic bacterial biofilm communities that inhabit algal surfaces. This study reports on the largest published libraries of near full-length 16S rRNA genes from a marine algal surface (5293 sequences from six samples) allowing for an in-depth assessment of the diversity and phylogenetic profile of the bacterial community on a green Ulvacean alga. Large 16S rRNA gene libraries of surrounding seawater were also used to determine the uniqueness of this bacterial community. The surface of Ulva australis is dominated by sequences of Alphaproteobacteria and the Bacteroidetes, especially within the Rhodobacteriaceae, Sphingomonadaceae, Flavobacteriaceae and Sapropiraceae families. Seawater libraries were also dominated by Alphaproteobacteria and Bacteroidetes sequences, but were shown to be clearly distinct from U. australis libraries through the clustering of sequences into operational taxonomic units and Bray-Curtis similarity analysis. Almost no similarity was observed between these two environments at the species level, and only minor similarity was observed at levels of sequence clustering representing clades of bacteria within family and genus taxonomic groups. Variability between libraries of U. australis was relatively high, and a consistent sub-population of bacterial species was not detected. The competitive lottery model, originally derived to explain diversity in coral reef fishes, may explain the pattern of colonization of this algal surface.

摘要

绿色的 Ulvacea 海洋大型藻类分布在全球沿海潮间带和亚潮带生态系统中。与海洋环境中的许多生物表面一样,对于栖息在藻类表面的附生细菌生物膜群落,我们知之甚少。本研究报告了来自海洋藻类表面的最大规模的已发表的近全长 16S rRNA 基因文库(来自六个样本的 5293 个序列),这使得我们能够深入评估绿 Ulvacea 藻类上细菌群落的多样性和系统发育概况。还使用周围海水的大型 16S rRNA 基因文库来确定该细菌群落的独特性。U. australis 的表面主要由α变形菌门和拟杆菌门的序列主导,尤其是在红杆菌科、鞘氨醇单胞菌科、黄杆菌科和 Sapropiraceae 科内。海水文库也主要由α变形菌门和拟杆菌门的序列主导,但通过将序列聚类为操作分类单位和 Bray-Curtis 相似性分析,表明它们与 U. australis 文库明显不同。在物种水平上,这两个环境之间几乎没有相似性,仅在代表科内和属分类群的细菌类群的序列聚类水平上观察到较小的相似性。U. australis 文库之间的变异性相对较高,并未检测到一致的细菌种亚群。最初用于解释珊瑚礁鱼类多样性的竞争彩票模型可能解释了这种藻类表面的定殖模式。