Nanosystem Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Umezono, Tsukuba, Ibaraki 305-8568, Japan.
J Phys Chem B. 2010 Dec 2;114(47):15700-5. doi: 10.1021/jp1068895. Epub 2010 Nov 4.
Several sialoside receptors can bind to three active sites on influenza A viral hemagglutinin (HA), determining the mechanism of the virus and host cell binding. Optimization of complex structures at the molecular mechanics level shows an insignificant conformational change of HA between the isolated state and the complex with three sialosides. The energetic analysis of the HA (X-31, Aichi/2/1968)-sialoside complexes performed with quantum-mechanical calculations of the complex containing about 24 000 atoms at the FMO2-MP2/PCM/6-31G(d) level suggests that the binding of one, two, or three receptors has the same binding energy per sialoside, thus the trivalent HA-sialoside binding is not regulated by the sialoside homotropic allosteric effect. These results rationalize the experimentally reported simple binding mode for the trivalent HA-monovalent sialoside interaction in solution at equilibrium.
几种唾液酸受体可以结合流感 A 病毒血凝素 (HA)上的三个活性位点,从而确定病毒与宿主细胞结合的机制。在分子力学水平上对复合物结构的优化表明,HA 在分离状态和与三个唾液酸的复合物之间的构象变化不明显。通过对包含约 24000 个原子的复合物进行量子力学计算,对 HA(X-31、Aichi/2/1968)-唾液酸复合物进行的能量分析表明,每个唾液酸的结合能相同,因此三价 HA-唾液酸的结合不受唾液酸同型变构效应的调节。这些结果合理地解释了实验报道的平衡溶液中三价 HA-单价唾液酸相互作用的简单结合模式。