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从水稻(Oryza sativa L.)根际土壤中分离得到的新种:水稻鞘氨醇单胞菌和锦州市鞘氨醇单胞菌。

Sphingomonas oryziterrae sp. nov. and Sphingomonas jinjuensis sp. nov. isolated from rhizosphere soil of rice (Oryza sativa L.).

机构信息

Department of Research and Development, JGreen Inc., Changnyeong 635-806, Republic of Korea.

Division of Applied Life Science (BK 21), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2389-2394. doi: 10.1099/ijs.0.023846-0. Epub 2010 Nov 5.

Abstract

Two Gram-reaction-negative, yellow-orange-pigmented, rod-shaped bacterial strains, designated YC6722(T) and YC6723(T), were isolated from rhizosphere soil samples collected from rice fields in Jinju, Korea. Strains YC6722(T) and YC6723(T) grew optimally at 25-30 °C and at pH 7.0-8.5. Phylogenetic analyses of 16S rRNA gene sequences showed that strain YC6722(T) was most closely related to Sphingomonas jaspsi TDMA-16(T) (96.6 % sequence similarity) and strain YC6723(T) was related most closely to Sphingomonas aquatilis JSS7(T) (96.9 %). The two strains contained ubiquinone-10 (Q-10) as the major respiratory quinone system and sym-homospermidine as the major polyamine. The G+C contents of the genomic DNA of strains YC6722(T) and YC6723(T) were 63.3 and 61.0 mol%, respectively. The major fatty acid was C(18 : 1)ω7c. The polar lipids detected in the two strains were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, sphingoglycolipid, phosphatidyldimethylethanolamine and other unknown lipids. On the basis of their phylogenetic positions, and their biochemical and phenotypic characteristics, strains YC6722(T) and YC6723(T) represent two novel species of the genus Sphingomonas, for which the names Sphingomonas oryziterrae sp. nov. ( = KCTC 22476(T)  = DSM 21455(T)) and Sphingomonas jinjuensis sp. nov. (KCTC 22477(T)  = DSM 21457(T)) are proposed.

摘要

两株革兰氏反应阴性、呈黄橙色的杆状细菌菌株,分别命名为 YC6722(T) 和 YC6723(T),从韩国晋州稻田根际土壤样本中分离得到。菌株 YC6722(T) 和 YC6723(T) 在 25-30°C 和 pH7.0-8.5 下生长最佳。16S rRNA 基因序列的系统发育分析表明,菌株 YC6722(T) 与 Sphingomonas jaspsi TDMA-16(T)(96.6%序列相似性)最为密切相关,而菌株 YC6723(T) 与 Sphingomonas aquatilis JSS7(T)(96.9%序列相似性)最为密切相关。两株菌都含有泛醌-10(Q-10)作为主要呼吸醌系统和 sym-homospermidine 作为主要多胺。菌株 YC6722(T) 和 YC6723(T) 的基因组 DNA G+C 含量分别为 63.3mol%和 61.0mol%。主要脂肪酸为 C(18:1)ω7c。在这两株菌中检测到的极性脂类有磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油、神经酰胺糖脂、磷脂酰二甲乙醇胺和其他未知脂类。根据它们的系统发育位置,以及它们的生化和表型特征,菌株 YC6722(T) 和 YC6723(T) 代表了 Sphingomonas 属的两个新种,分别命名为 Sphingomonas oryziterrae sp. nov.(=KCTC 22476(T)=DSM 21455(T))和 Sphingomonas jinjuensis sp. nov.(KCTC 22477(T)=DSM 21457(T))。

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