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生物网格相互作用数据库:2011年更新版

The BioGRID Interaction Database: 2011 update.

作者信息

Stark Chris, Breitkreutz Bobby-Joe, Chatr-Aryamontri Andrew, Boucher Lorrie, Oughtred Rose, Livstone Michael S, Nixon Julie, Van Auken Kimberly, Wang Xiaodong, Shi Xiaoqi, Reguly Teresa, Rust Jennifer M, Winter Andrew, Dolinski Kara, Tyers Mike

机构信息

Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto M5G 1X5, Canada.

出版信息

Nucleic Acids Res. 2011 Jan;39(Database issue):D698-704. doi: 10.1093/nar/gkq1116. Epub 2010 Nov 11.

Abstract

The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans (http://www.thebiogrid.org). BioGRID currently holds 347,966 interactions (170,162 genetic, 177,804 protein) curated from both high-throughput data sets and individual focused studies, as derived from over 23,000 publications in the primary literature. Complete coverage of the entire literature is maintained for budding yeast (Saccharomyces cerevisiae), fission yeast (Schizosaccharomyces pombe) and thale cress (Arabidopsis thaliana), and efforts to expand curation across multiple metazoan species are underway. The BioGRID houses 48,831 human protein interactions that have been curated from 10,247 publications. Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.0 web interface contains new search and display features that enable rapid queries across multiple data types and sources. An automated Interaction Management System (IMS) is used to prioritize, coordinate and track curation across international sites and projects. BioGRID provides interaction data to several model organism databases, resources such as Entrez-Gene and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including PSI MI XML. Source code for BioGRID 3.0 is freely available without any restrictions.

摘要

生物相互作用数据集通用知识库(BioGRID)是一个公共数据库,用于存档和传播来自模式生物及人类的遗传和蛋白质相互作用数据(http://www.thebiogrid.org)。BioGRID目前包含从高通量数据集和个别重点研究中整理出的347,966个相互作用(170,162个遗传相互作用,177,804个蛋白质相互作用),这些数据源自超过23,000篇原始文献中的出版物。对芽殖酵母(酿酒酵母)、裂殖酵母(粟酒裂殖酵母)和拟南芥的整个文献实现了完整覆盖,并且正在努力扩大对多个后生动物物种的整理工作。BioGRID收录了从10,247篇出版物中整理出的48,831个人类蛋白质相互作用。当前的整理工作重点关注生物学的特定领域,以便深入了解与人类健康相关的保守网络和途径。BioGRID 3.0网络界面包含新的搜索和显示功能,可实现对多种数据类型和来源的快速查询。一个自动化的相互作用管理系统(IMS)用于对国际站点和项目的整理工作进行优先级排序、协调和跟踪。BioGRID向多个模式生物数据库、诸如Entrez-Gene等资源以及其他相互作用元数据库提供相互作用数据。整个BioGRID 3.0数据集合可以多种文件格式下载,包括PSI MI XML。BioGRID 3.0的源代码可免费获取,无任何限制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7628/3013707/5a19f3a7e45c/gkq1116f1.jpg

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