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SigMate:一款基于MATLAB的神经元信号处理工具。

SigMate: A MATLAB-based neuronal signal processing tool.

作者信息

Mahmud Mufti, Bertoldo Alessandra, Girardi Stefano, Maschietto Marta, Vassanelli Stefano

机构信息

NeuroChip Laboratory of Department of Human Anatomy & Physiology and Department of Information Engineering, University of Padova, 35131, Italy.

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2010;2010:1352-5. doi: 10.1109/IEMBS.2010.5626747.

Abstract

Advances in neuronal probe technology to record brain activity have posed a significant challenge in performing necessary processing and analysis of the recorded data. To be able to infer meaningful conclusions from the recorded signals through these probes, sophisticated signal processing and analysis tools are required. This paper presents a MATLAB-based novel tool, 'SigMate', capable of performing various processing and analysis incorporating the available standard tools and our in-house custom tools. The present features include, data display (2D and 3D), baseline correction, stimulus artifact removal, noise characterization, file operations (file splitter, file concatenator, and file column rearranger), latency estimation, determination of cortical layer activation order, spike detection, spike sorting, and are gradually growing. This tool has been tested extensively for the recordings using the standard micropipettes as well as implantable neural probes based on EOSFETs (Electrolyte-Oxide-Semiconductor Field Effect Transistors) and will be made available to the community shortly.

摘要

用于记录大脑活动的神经元探针技术的进步,给对记录数据进行必要的处理和分析带来了重大挑战。为了能够通过这些探针从记录的信号中推断出有意义的结论,需要复杂的信号处理和分析工具。本文介绍了一种基于MATLAB的新型工具“SigMate”,它能够结合现有的标准工具和我们内部的定制工具进行各种处理和分析。目前的功能包括数据显示(二维和三维)、基线校正、刺激伪迹去除、噪声表征、文件操作(文件分割器、文件合并器和文件列重新排列器)、潜伏期估计、皮层层激活顺序的确定、尖峰检测、尖峰分类,并且这些功能还在逐步增加。该工具已针对使用标准微电极以及基于电解质-氧化物-半导体场效应晶体管(EOSFETs)的可植入神经探针的记录进行了广泛测试,并将很快向社区提供。

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