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Derivation of Ca2+ signals from puff properties reveals that pathway function is robust against cell variability but sensitive for control.从脉冲特性中推导出 Ca2+信号表明,该途径的功能对细胞变异性具有鲁棒性,但对控制因素敏感。
Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):427-32. doi: 10.1073/pnas.1008435108. Epub 2010 Dec 20.
2
Modeling IP-induced Ca signaling based on its interspike interval statistics.基于峰间隔统计对 IP 诱导的钙信号进行建模。
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3
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J Math Biol. 2025 Mar 25;90(4):43. doi: 10.1007/s00285-025-02202-3.
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本文引用的文献

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Fundamental limits on the suppression of molecular fluctuations.分子涨落抑制的基本限制。
Nature. 2010 Sep 9;467(7312):174-8. doi: 10.1038/nature09333.
2
Calcium signals driven by single channel noise.由单通道噪声驱动的钙信号。
PLoS Comput Biol. 2010 Aug 5;6(8):e1000870. doi: 10.1371/journal.pcbi.1000870.
3
Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics.封端蛋白结合的分子噪声在丝状伪足动力学中诱导宏观不稳定性。
Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11570-5. doi: 10.1073/pnas.0812746106. Epub 2009 Jun 25.
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Waiting time distributions for clusters of IP3 receptors.三磷酸肌醇受体簇的等待时间分布
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5
Clustering of InsP3 receptors by InsP3 retunes their regulation by InsP3 and Ca2+.肌醇三磷酸(InsP3)使肌醇三磷酸受体聚集,从而重新调整其对肌醇三磷酸和钙离子(Ca2+)的调节。
Nature. 2009 Apr 2;458(7238):655-9. doi: 10.1038/nature07763.
6
Imaging the quantal substructure of single IP3R channel activity during Ca2+ puffs in intact mammalian cells.对完整哺乳动物细胞中Ca2+ 释放期间单个IP3R通道活性的量子亚结构进行成像。
Proc Natl Acad Sci U S A. 2009 Apr 14;106(15):6404-9. doi: 10.1073/pnas.0810799106. Epub 2009 Mar 30.
7
Localization of puff sites adjacent to the plasma membrane: functional and spatial characterization of Ca2+ signaling in SH-SY5Y cells utilizing membrane-permeant caged IP3.与质膜相邻的胀泡位点的定位:利用膜通透性笼化肌醇三磷酸对SH-SY5Y细胞中Ca2+信号进行功能和空间表征
Cell Calcium. 2009 Jan;45(1):65-76. doi: 10.1016/j.ceca.2008.06.001. Epub 2008 Jul 17.
8
Ca2+ oscillation frequency regulates agonist-stimulated gene expression in vascular endothelial cells.钙离子振荡频率调节血管内皮细胞中激动剂刺激的基因表达。
J Cell Sci. 2008 Aug 1;121(Pt 15):2511-8. doi: 10.1242/jcs.031997. Epub 2008 Jul 15.
9
Statistical properties and information content of calcium oscillations.钙振荡的统计特性和信息含量
Genome Inform. 2007;18:44-53.
10
Stochastic aspects of oscillatory Ca2+ dynamics in hepatocytes.肝细胞中振荡性钙离子动力学的随机方面
Biophys J. 2008 Sep;95(5):2193-202. doi: 10.1529/biophysj.108.133777. Epub 2008 May 30.

从脉冲特性中推导出 Ca2+信号表明,该途径的功能对细胞变异性具有鲁棒性,但对控制因素敏感。

Derivation of Ca2+ signals from puff properties reveals that pathway function is robust against cell variability but sensitive for control.

机构信息

Mathematical Cell Physiology, Max Delbrück Center for Molecular Medicine, Robert Rössle Strasse 10, 13092 Berlin, Germany.

出版信息

Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):427-32. doi: 10.1073/pnas.1008435108. Epub 2010 Dec 20.

DOI:10.1073/pnas.1008435108
PMID:21173273
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3017167/
Abstract

Ca(2+) is a universal second messenger in eukaryotic cells transmitting information through sequences of concentration spikes. A prominent mechanism to generate these spikes involves Ca(2+) release from the endoplasmic reticulum Ca(2+) store via inositol 1,4,5-trisphosphate (IP(3))-sensitive channels. Puffs are elemental events of IP(3)-induced Ca(2+) release through single clusters of channels. Intracellular Ca(2+) dynamics are a stochastic system, but a complete stochastic theory has not been developed yet. We formulate the theory in terms of interpuff interval and puff duration distributions because, unlike the properties of individual channels, they can be measured in vivo. Our theory reproduces the typical spectrum of Ca(2+) signals like puffs, spiking, and bursting in analytically treatable test cases as well as in more realistic simulations. We find conditions for spiking and calculate interspike interval (ISI) distributions. Signal form, average ISI and ISI distributions depend sensitively on the details of cluster properties and their spatial arrangement. In contrast to that, the relation between the average and the standard deviation of ISIs does not depend on cluster properties and cluster arrangement and is robust with respect to cell variability. It is controlled by the global feedback processes in the Ca(2+) signaling pathway (e.g., via IP(3)-3-kinase or endoplasmic reticulum depletion). That relation is essential for pathway function because it ensures frequency encoding despite the randomness of ISIs and determines the maximal spike train information content. Hence, we find a division of tasks between global feedbacks and local cluster properties that guarantees robustness of function while maintaining sensitivity of control of the average ISI.

摘要

钙离子是真核细胞中的一种普遍的第二信使,通过浓度波的序列传递信息。生成这些波的一个主要机制涉及通过肌醇 1,4,5-三磷酸 (IP3) 敏感通道从内质网 Ca2+库中释放 Ca2+。爆发是通过单个通道簇引起的 IP3 诱导的 Ca2+释放的基本事件。细胞内 Ca2+动力学是一个随机系统,但尚未建立完整的随机理论。我们根据爆发间隔和爆发持续时间分布来制定理论,因为与单个通道的特性不同,它们可以在体内测量。我们的理论以可分析处理的测试案例以及更现实的模拟中重现了爆发、尖峰和爆发等典型 Ca2+信号谱。我们找到了尖峰的条件,并计算了尖峰间隔 (ISI) 分布。信号形式、平均 ISI 和 ISI 分布对簇特性及其空间排列的细节非常敏感。相比之下,平均 ISI 和 ISI 分布之间的关系不依赖于簇特性和簇排列,并且对细胞变异性具有鲁棒性。它受 Ca2+信号通路中的全局反馈过程(例如,通过 IP3-3-激酶或内质网耗竭)控制。该关系对于途径功能至关重要,因为它确保了尽管 ISI 具有随机性,但仍能进行频率编码,并确定最大尖峰序列信息含量。因此,我们发现全局反馈和局部簇特性之间存在任务分工,这保证了功能的鲁棒性,同时保持了对平均 ISI 的控制的敏感性。