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单碱基对鸟嘌呤和胸腺嘧啶在单壁碳纳米管上的吸附机制。

Adsorption mechanism of single guanine and thymine on single-walled carbon nanotubes.

机构信息

School of Physics, Madurai Kamaraj University, Madurai, Tamil Nadu 625 021, India.

出版信息

J Mol Model. 2011 Nov;17(11):2773-80. doi: 10.1007/s00894-010-0946-7. Epub 2011 Jan 29.

DOI:10.1007/s00894-010-0946-7
PMID:21279529
Abstract

Bio-nano hybrids introduce magnificent applications of nanomaterials to various fields. The choice of carbon nanotube as well as sequence selection of the nucleic acid bases play a crucial role in shaping DNA-carbon nanotube hybrids. To come up with a clear vision for the choice of carbon nanotube and nucleic acid bases to create bio-nano hybrids, we studied the adsorption mechanism of the nucleic acid bases guanine and thymine on four different types of nanotubes based on density functional theory. Nucleic acid bases exhibit differential binding strengths according to their structural geometry, inter-molecular distances, the carbon nanotube diameter, and charge transfer. The π-π interaction mechanism between the adsorbent and adsorbate is discussed in terms of charge density profile and electronic band structure analysis.

摘要

生物-纳米杂化材料将纳米材料的卓越应用引入到各个领域。碳纳米管的选择以及核酸碱基的序列选择在塑造 DNA-碳纳米管杂化材料方面起着至关重要的作用。为了对碳纳米管和核酸碱基的选择有一个清晰的认识,从而构建生物-纳米杂化材料,我们基于密度泛函理论研究了碱基鸟嘌呤和胸腺嘧啶在四种不同类型的纳米管上的吸附机制。核酸碱基根据其结构几何形状、分子间距离、碳纳米管直径和电荷转移表现出不同的结合强度。通过电荷密度分布和能带结构分析讨论了吸附剂和吸附质之间的π-π相互作用机制。

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本文引用的文献

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Nanotechnology. 2008 Mar 26;19(12):125701. doi: 10.1088/0957-4484/19/12/125701. Epub 2008 Feb 21.
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Biomimetic chemosensor: designing peptide recognition elements for surface functionalization of carbon nanotube field effect transistors.仿生化学传感器:用于碳纳米管场效应晶体管表面功能化的肽识别元件设计。
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水环境中生物分子物理吸附下单壁和双壁碳纳米管的振动行为:分子动力学研究
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水中单链DNA对碳纳米管进行非共价杂交的模拟研究。
J Phys Chem B. 2008 Dec 18;112(50):16076-89. doi: 10.1021/jp8040567.
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Raman spectroscopy study and first-principles calculations of the interaction between nucleic acid bases and carbon nanotubes.核酸碱基与碳纳米管相互作用的拉曼光谱研究及第一性原理计算
J Phys Chem A. 2009 Apr 16;113(15):3621-9. doi: 10.1021/jp810205a.
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Supramolecular chemistry on water-soluble carbon nanotubes for drug loading and delivery.用于药物负载与递送的水溶性碳纳米管上的超分子化学
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6
Theoretical Evidence for the Stronger Ability of Thymine to Disperse SWCNT than Cytosine and Adenine: self-stacking of DNA bases vs their cross-stacking with SWCNT.胸腺嘧啶比胞嘧啶和腺嘌呤更能分散单壁碳纳米管的理论证据:DNA碱基的自堆积与它们与单壁碳纳米管的交叉堆积
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Probing the structure of DNA-carbon nanotube hybrids with molecular dynamics.利用分子动力学探究DNA-碳纳米管杂化物的结构
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