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PTIP 在免疫球蛋白重链基因座的类别转换重组和长程染色质相互作用中的作用。

Role of PTIP in class switch recombination and long-range chromatin interactions at the immunoglobulin heavy chain locus.

机构信息

Department of Pathology, University of Michigan, BSRB 2049, 109 Zina Pitcher Dr., Ann Arbor, MI 48109, USA.

出版信息

Mol Cell Biol. 2011 Apr;31(7):1503-11. doi: 10.1128/MCB.00990-10. Epub 2011 Jan 31.

DOI:10.1128/MCB.00990-10
PMID:21282469
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3135287/
Abstract

How distal transcriptional enhancer sequences interact with proximal promoters is poorly understood within the context of chromatin. In this report, we have used the immunoglobulin heavy chain locus to address the role of the PTIP protein in transcription regulation and class switch recombination in B cells, a process that depends on regulated transcription and DNA recombination via Pax5 and distal 3' enhancer sequences. We first show that PTIP is recruited to a Pax5 binding site to promote histone H3 lysine 4 (H3K4) methylation. Using a CD19-Cre driver strain, we deleted PTIP in mature B cells. Loss of PTIP inhibited class switch recombination by suppressing transcription and histone H3K4 methylation at the germ line transcript promoters. In the absence of PTIP, Pax5 binding to the promoter regions is reduced and long-range chromatin interactions between the distal enhancer at the 3' regulatory region and the germ line transcript promoters are not detected. We propose a model whereby PTIP stabilizes the Pax5 DNA interactions that promote chromatin looping and regulate transcriptional responses needed for class switch recombination.

摘要

在染色质背景下,远端转录增强子序列如何与近端启动子相互作用还不太清楚。在本报告中,我们使用免疫球蛋白重链基因座来研究 PTIP 蛋白在 B 细胞转录调控和类别转换重组中的作用,该过程依赖于 Pax5 和远端 3' 增强子序列的调节转录和 DNA 重组。我们首先表明,PTIP 被募集到 Pax5 结合位点以促进组蛋白 H3 赖氨酸 4(H3K4)甲基化。使用 CD19-Cre 驱动株,我们在成熟 B 细胞中删除了 PTIP。PTIP 的缺失通过抑制转录和组蛋白 H3K4 在种系转录启动子上的甲基化来抑制类别转换重组。在没有 PTIP 的情况下,Pax5 与启动子区域的结合减少,并且在 3' 调控区的远端增强子和种系转录启动子之间没有检测到长距离染色质相互作用。我们提出了一个模型,即 PTIP 稳定了 Pax5 的 DNA 相互作用,促进了染色质环化,并调节了类别转换重组所需的转录反应。

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本文引用的文献

1
PTIP promotes chromatin changes critical for immunoglobulin class switch recombination.PTIP 促进了免疫球蛋白类别转换重组所必需的染色质变化。
Science. 2010 Aug 20;329(5994):917-23. doi: 10.1126/science.1187942. Epub 2010 Jul 29.
2
Transcription factors mediate long-range enhancer-promoter interactions.转录因子介导长程增强子-启动子相互作用。
Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20222-7. doi: 10.1073/pnas.0902454106. Epub 2009 Nov 18.
3
Switch recombination and somatic hypermutation are controlled by the heavy chain 3' enhancer region.转换重组和体细胞超突变由重链3'增强子区域控制。
J Exp Med. 2009 Nov 23;206(12):2613-23. doi: 10.1084/jem.20091280. Epub 2009 Nov 2.
4
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II.H3K4甲基化的全基因组分析确定了MLL家族成员的靶点,并指出MLL1介导的H3K4甲基化在RNA聚合酶II调控转录起始过程中的作用。
Mol Cell Biol. 2009 Nov;29(22):6074-85. doi: 10.1128/MCB.00924-09. Epub 2009 Aug 24.
5
The role of PTIP in maintaining embryonic stem cell pluripotency.PTIP在维持胚胎干细胞多能性中的作用。
Stem Cells. 2009 Jul;27(7):1516-23. doi: 10.1002/stem.79.
6
Drosophila ptip is essential for anterior/posterior patterning in development and interacts with the PcG and trxG pathways.果蝇ptip对于发育过程中的前后模式形成至关重要,并与PcG和trxG途径相互作用。
Development. 2009 Jun;136(11):1929-38. doi: 10.1242/dev.026559.
7
Control of histone methylation and genome stability by PTIP.PTIP对组蛋白甲基化和基因组稳定性的调控
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8
Perplexing Pax: from puzzle to paradigm.令人困惑的帕克斯:从谜题到范式
Dev Dyn. 2008 Oct;237(10):2791-803. doi: 10.1002/dvdy.21711.
9
Chromatin loops in gene regulation.基因调控中的染色质环
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10
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation.组蛋白H3赖氨酸4(H3K4)甲基化的分子机制及生理作用
Curr Opin Cell Biol. 2008 Jun;20(3):341-8. doi: 10.1016/j.ceb.2008.03.019. Epub 2008 May 26.