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腹部-B 启动子束缚元件的破坏导致果蝇中长距离增强子指导的 Hox 基因表达丧失。

Disruption of the abdominal-B promoter tethering element results in a loss of long-range enhancer-directed Hox gene expression in Drosophila.

机构信息

Biology Department, Harvey Mudd College, Claremont, California, United States of America.

出版信息

PLoS One. 2011 Jan 21;6(1):e16283. doi: 10.1371/journal.pone.0016283.

DOI:10.1371/journal.pone.0016283
PMID:21283702
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3025016/
Abstract

There are many examples within gene complexes of transcriptional enhancers interacting with only a subset of target promoters. A number of molecular mechanisms including promoter competition, insulators and chromatin looping are thought to play a role in regulating these interactions. At the Drosophila bithorax complex (BX-C), the IAB5 enhancer specifically drives gene expression only from the Abdominal-B (Abd-B) promoter, even though the enhancer and promoter are 55 kb apart and are separated by at least three insulators. In previous studies, we discovered that a 255 bp cis-regulatory module, the promoter tethering element (PTE), located 5' of the Abd-B transcriptional start site is able to tether IAB5 to the Abd-B promoter in transgenic embryo assays. In this study we examine the functional role of the PTE at the endogenous BX-C using transposon-mediated mutagenesis. Disruption of the PTE by P element insertion results in a loss of enhancer-directed Abd-B expression during embryonic development and a homeotic transformation of abdominal segments. A partial deletion of the PTE and neighboring upstream genomic sequences by imprecise excision of the P element also results in a similar loss of Abd-B expression in embryos. These results demonstrate that the PTE is an essential component of the regulatory network at the BX-C and is required in vivo to mediate specific long-range enhancer-promoter interactions.

摘要

基因复合物中有许多转录增强子只与靶启动子的一个子集相互作用的例子。一些分子机制,包括启动子竞争、绝缘子和染色质环化,被认为在调节这些相互作用中发挥作用。在果蝇的双胸复合体(BX-C)中,IAB5 增强子仅特异性地驱动 Abdominal-B(Abd-B)启动子的基因表达,尽管增强子和启动子相距 55kb,并且至少被三个绝缘子隔开。在以前的研究中,我们发现一个位于 Abd-B 转录起始位点 5'端的 255bp 顺式调控模块,即启动子束缚元件(PTE),能够在转基因胚胎实验中将 IAB5 束缚在 Abd-B 启动子上。在这项研究中,我们使用转座子介导的诱变来研究 PTE 在内源 BX-C 中的功能作用。通过 P 元素插入破坏 PTE 会导致胚胎发育过程中增强子指导的 Abd-B 表达丧失,并导致腹部节段的同源转化。通过 P 元素的不精确切除,PTE 和邻近的上游基因组序列的部分缺失也会导致胚胎中 Abd-B 表达的类似丧失。这些结果表明,PTE 是 BX-C 调控网络的一个重要组成部分,在体内需要介导特定的长距离增强子-启动子相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/74ee117d5029/pone.0016283.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/663812e3e8d4/pone.0016283.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/13ba2bc683bd/pone.0016283.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/1ae9aaad9c93/pone.0016283.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/74ee117d5029/pone.0016283.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/663812e3e8d4/pone.0016283.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/13ba2bc683bd/pone.0016283.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/1ae9aaad9c93/pone.0016283.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d99/3025016/74ee117d5029/pone.0016283.g004.jpg

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