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果蝇同源异型盒复合体胚胎增强子中转录因子结合位点冗余。

Transcription factor binding site redundancy in embryonic enhancers of the Drosophila bithorax complex.

机构信息

Biology Department, Harvey Mudd College, Claremont, California 91711.

出版信息

G3 (Bethesda). 2011 Dec;1(7):603-6. doi: 10.1534/g3.111.001404. Epub 2011 Dec 1.

DOI:10.1534/g3.111.001404
PMID:22384371
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3276168/
Abstract

The molecular control of gene expression in development is mediated through the activity of embryonic enhancer cis-regulatory modules. This activity is determined by the combination of repressor and activator transcription factors that bind at specific DNA sequences in the enhancer. A proposed mechanism to ensure a high fidelity of transcriptional output is functional redundancy between closely spaced binding sites within an enhancer. Here I show that at the bithorax complex in Drosophila there is selective redundancy for both repressor and activator factor binding sites in vivo. The absence of compensatory binding sites is responsible for two rare gain-of-function mutations in the complex.

摘要

胚胎增强子顺式调控模块的活性介导了发育过程中基因表达的分子调控。这种活性是由结合在增强子特定 DNA 序列上的抑制因子和激活转录因子的组合决定的。一个确保转录输出高保真度的建议机制是增强子内紧密间隔的结合位点之间的功能冗余。在这里,我表明在果蝇的双胸复合体中,体内存在针对抑制因子和激活因子结合位点的选择性冗余。缺乏补偿结合位点是该复合体中两个罕见的功能获得性突变的原因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57f9/3276168/2f6a50126e1c/603f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57f9/3276168/a37d7bbe36f3/603f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57f9/3276168/2f6a50126e1c/603f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57f9/3276168/a37d7bbe36f3/603f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57f9/3276168/2f6a50126e1c/603f2.jpg

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本文引用的文献

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Molecular dissection of cis-regulatory modules at the Drosophila bithorax complex reveals critical transcription factor signature motifs.在果蝇同源异型盒复合体中对顺式调控模块进行分子剖析,揭示了关键转录因子特征基序。
Dev Biol. 2011 Nov 15;359(2):290-302. doi: 10.1016/j.ydbio.2011.07.028. Epub 2011 Jul 28.
2
Long- and short-range transcriptional repressors induce distinct chromatin states on repressed genes.长程和短程转录抑制因子在受抑制基因上诱导不同的染色质状态。
Curr Biol. 2011 Mar 8;21(5):406-12. doi: 10.1016/j.cub.2011.01.054. Epub 2011 Feb 25.
3
Disruption of the abdominal-B promoter tethering element results in a loss of long-range enhancer-directed Hox gene expression in Drosophila.
腹部-B 启动子束缚元件的破坏导致果蝇中长距离增强子指导的 Hox 基因表达丧失。
PLoS One. 2011 Jan 21;6(1):e16283. doi: 10.1371/journal.pone.0016283.
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Variable transcription factor binding: a mechanism of evolutionary change.可变转录因子结合:进化变化的一种机制。
PLoS Biol. 2010 Mar 23;8(3):e1000342. doi: 10.1371/journal.pbio.1000342.
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Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila.解析发育的调控开关:来自果蝇增强子进化的启示。
Development. 2010 Jan;137(1):5-13. doi: 10.1242/dev.036160.
6
Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila.果蝇同源异型基因顺式调控模块的功能进化。
PLoS Genet. 2009 Nov;5(11):e1000709. doi: 10.1371/journal.pgen.1000709. Epub 2009 Nov 6.
7
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.21 种果蝇转录因子的发育作用是由其与数千个重叠基因组区域的结合的定量差异决定的。
Genome Biol. 2009;10(7):R80. doi: 10.1186/gb-2009-10-7-r80. Epub 2009 Jul 23.
8
A closer look at the eve stripe 2 enhancers of Drosophila and Themira.深入研究果蝇和Themira的第2条eve条纹增强子。
PLoS Genet. 2008 Nov;4(11):e1000276. doi: 10.1371/journal.pgen.1000276. Epub 2008 Nov 28.
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A careful look at binding site reorganization in the even-skipped enhancers of Drosophila and sepsids.仔细观察果蝇和脓蝇偶数条纹增强子中的结合位点重组。
PLoS Genet. 2008 Nov;4(11):e1000268. doi: 10.1371/journal.pgen.1000268. Epub 2008 Nov 28.
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Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.脓毒症偶数跳过增强子在果蝇中功能保守,尽管缺乏序列保守性。
PLoS Genet. 2008 Jun 27;4(6):e1000106. doi: 10.1371/journal.pgen.1000106.