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1
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton.全球重要未培养真核浮游植物的靶向宏基因组学和生态学研究。
Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14679-84. doi: 10.1073/pnas.1001665107. Epub 2010 Jul 28.
2
Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean.小型颗石藻在亚热带和热带东北大西洋的显著 CO2 固定作用。
ISME J. 2010 Sep;4(9):1180-92. doi: 10.1038/ismej.2010.36. Epub 2010 Apr 15.
3
Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current.加利福尼亚中部海流中硝化古菌和细菌的活性、丰度和多样性。
Environ Microbiol. 2010 Jul;12(7):1989-2006. doi: 10.1111/j.1462-2920.2010.02205.x. Epub 2010 Mar 23.
4
Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain.单细胞蓝藻的分布拓宽了海洋固氮领域。
Science. 2010 Mar 19;327(5972):1512-4. doi: 10.1126/science.1185468. Epub 2010 Feb 25.
5
Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean.无培养代表的类群在寡营养的东南太平洋浮游植物中占优势。
PLoS One. 2009 Oct 29;4(10):e7657. doi: 10.1371/journal.pone.0007657.
6
Photosystem II and pigment dynamics among ecotypes of the green alga Ostreococcus.绿藻奥氏藻生态型中的光系统II和色素动态
Plant Physiol. 2009 Sep;151(1):379-90. doi: 10.1104/pp.109.140566. Epub 2009 Jul 8.
7
Seasonality and vertical structure of microbial communities in an ocean gyre.海洋环流中微生物群落的季节性和垂直结构
ISME J. 2009 Oct;3(10):1148-63. doi: 10.1038/ismej.2009.60. Epub 2009 Jun 4.
8
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.海洋微微型真核生物微小原甲藻基因组揭示的绿色进化与动态适应
Science. 2009 Apr 10;324(5924):268-72. doi: 10.1126/science.1167222.
9
The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems.海洋生态系统中微小真核浮游植物(≤3微米)的多样性。
FEMS Microbiol Rev. 2008 Aug;32(5):795-820. doi: 10.1111/j.1574-6976.2008.00121.x. Epub 2008 Jun 28.
10
Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon.季风转换期间南海固氮微生物的多样性与丰度
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不同光养微微型真核生物盘藻属进化枝的全球分布格局。

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus.

机构信息

Monterey Bay Aquarium Research Institute, Moss Landing, CA, USA.

出版信息

ISME J. 2011 Jul;5(7):1095-107. doi: 10.1038/ismej.2010.209. Epub 2011 Feb 3.

DOI:10.1038/ismej.2010.209
PMID:21289652
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3146286/
Abstract

Ostreococcus is a marine picophytoeukaryote for which culture studies indicate there are 'high-light' and 'low-light' adapted ecotypes. Representatives of these ecotypes fall within two to three 18S ribosomal DNA (rDNA) clades for the former and one for the latter. However, clade distributions and relationships to this form of niche partitioning are unknown in nature. We developed two quantitative PCR primer-probe sets and enumerated the proposed ecotypes in the Pacific Ocean as well as the subtropical and tropical North Atlantic. Statistical differences in factors such as salinity, temperature and NO(3) indicated the ecophysiological parameters behind clade distributions are more complex than irradiance alone. Clade OII, containing the putatively low-light adapted strains, was detected at warm oligotrophic sites. In contrast, Clade OI, containing high-light adapted strains, was present in cooler mesotrophic and coastal waters. Maximal OI abundance (19 555±37 18S rDNA copies per ml) was detected in mesotrophic waters at 40 m depth, approaching the nutricline. OII was often more abundant at the deep chlorophyll maximum, when nutrient concentrations were significantly higher than at the surface (stratified euphotic zone waters). However, in mixed euphotic-zone water columns, relatively high numbers (for example, 891±107 18S rDNA copies per ml, Sargasso Sea, springtime) were detected at the surface. Both Clades OI and OII were found at multiple euphotic zone depths, but co-occurrence at the same geographical location appeared rare and was detected only in continental slope waters. In situ growth rate estimates using these primer-probes and better comprehension of physiology will enhance ecological understanding of Ostreococcus Clades OII and OI which appear to be oceanic and coastal clades, respectively.

摘要

微藻盘星藻是一种海洋原绿球藻,其培养研究表明存在“高光”和“低光”适应生态型。这两种生态型的代表分别属于 2-3 个 18S 核糖体 DNA(rDNA) 进化枝和 1 个进化枝。然而,在自然界中,这种生态位分化的进化枝分布和关系尚不清楚。我们开发了两种定量 PCR 引物-探针集,并在太平洋以及亚热带和热带北大西洋对这两种拟议的生态型进行了计数。盐度、温度和 NO3 等因素的统计差异表明,进化枝分布背后的生态生理参数比光照更为复杂。包含低光适应株的 OII 进化枝在温暖的贫营养区被检测到。相比之下,包含高光适应株的 OI 进化枝存在于较凉爽的中营养和沿海水域。在 40 米深的中营养水域中检测到 OI 的最大丰度(19555±37 18S rDNA 拷贝/毫升),接近营养层。OII 在深层叶绿素最大值时通常更为丰富,此时营养浓度明显高于表面(分层透光带水域)。然而,在混合透光带水柱中,在表层检测到相对较高的数量(例如,马尾藻海春季的 891±107 18S rDNA 拷贝/毫升)。OI 和 OII 这两个进化枝都在多个透光带深度被发现,但在同一地理位置的共存似乎很少见,仅在大陆坡水域被检测到。使用这些引物-探针进行原位生长速率估算,并更好地了解生理学,将增强对盘星藻 OI 和 OII 进化枝的生态理解,它们分别似乎是海洋和沿海进化枝。