Lopes Dos Santos Adriana, Gourvil Priscillia, Tragin Margot, Noël Mary-Hélène, Decelle Johan, Romac Sarah, Vaulot Daniel
Sorbonne Universités, UPMC Université Paris 06, CNRS, UMR 7144 Station Biologique de Roscoff, Roscoff, France.
National Institute for Environmental Studies, Tsukuba, Japan.
ISME J. 2017 Feb;11(2):512-528. doi: 10.1038/ismej.2016.120. Epub 2016 Oct 25.
Prasinophytes clade VII is a group of pico/nano-planktonic green algae (division Chlorophyta) for which numerous ribosomal RNA (rRNA) sequences have been retrieved from the marine environment in the last 15 years. A large number of strains have also been isolated but have not yet received a formal taxonomic description. A phylogenetic analysis of available strains using both the nuclear 18S and plastidial 16S rRNA genes demonstrates that this group composes at least 10 different clades: A1-A7 and B1-B3. Analysis of sequences from the variable V9 region of the 18S rRNA gene collected during the Tara Oceans expedition and in the frame of the Ocean Sampling Day consortium reveal that clade VII is the dominant Chlorophyta group in oceanic waters, replacing Mamiellophyceae, which have this role in coastal waters. At some location, prasinophytes clade VII can even be the dominant photosynthetic eukaryote representing up to 80% of photosynthetic metabarcodes overall. B1 and A4 are the overall dominant clades and different clades seem to occupy distinct niches, for example, A6 is dominant in surface Mediterranean Sea waters, whereas A4 extend to high temperate latitudes. Our work demonstrates that prasinophytes clade VII constitute a highly diversified group, which is a key component of phytoplankton in open oceanic waters but has been neglected in the conceptualization of marine microbial diversity and carbon cycle.
绿藻门VII分支是一群微微型/微型浮游绿藻(绿藻纲),在过去15年里,已从海洋环境中获取了大量该类群的核糖体RNA(rRNA)序列。也分离出了大量菌株,但尚未得到正式的分类学描述。利用核18S和质体16S rRNA基因对现有菌株进行系统发育分析表明,该类群至少由10个不同的分支组成:A1 - A7和B1 - B3。对在塔拉海洋考察期间以及海洋采样日联盟框架下收集的18S rRNA基因可变V9区域序列的分析显示,VII分支是大洋水域中占主导地位的绿藻纲类群,取代了在沿海水域起这一作用的扁藻科。在某些地点,绿藻门VII分支甚至可能是占主导地位的光合真核生物,占总体光合代谢条形码的80%。B1和A4是总体上占主导的分支,不同分支似乎占据不同的生态位,例如,A6在地中海表层水域占主导,而A4延伸至高纬度温带地区。我们的研究表明,绿藻门VII分支构成了一个高度多样化的类群,它是开阔大洋水域浮游植物的关键组成部分,但在海洋微生物多样性和碳循环的概念化过程中一直被忽视。