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NMR 和药物设计中的蛋白质结构:在环肽和 conotoxin 中的应用。

NMR and protein structure in drug design: application to cyclotides and conotoxins.

机构信息

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.

出版信息

Eur Biophys J. 2011 Apr;40(4):359-70. doi: 10.1007/s00249-011-0672-9. Epub 2011 Feb 3.

DOI:10.1007/s00249-011-0672-9
PMID:21290122
Abstract

Nuclear magnetic resonance spectroscopy (NMR) is a powerful technique for determining the structures, dynamics and interactions of molecules, and the derived information can be useful in drug design applications. This article gives a brief overview of the role of NMR in drug design and illustrates this role with examples studied in our laboratory in recent years on disulfide-rich peptides, including cyclotides and conotoxins. Cyclotides are head-to-tail cyclized proteins from plants that are exceptionally stable and hence make useful templates for the stabilization of bioactive peptide epitopes as well as potential leads for anti-HIV drugs. Natural cyclotides target cell membranes, so understanding cyclotide-membrane interactions is useful in applying cyclotides in drug design applications. NMR studies of these interactions are described in this article. Conotoxins are disulfide-rich peptides, from the venoms of marine cone snails, which are of pharmaceutical interest because they potently interact with a range of ion channels, transporters and other receptor sites implicated in disease states. Chemically re-engineering conotoxins to give them a cyclic backbone has been used to engender them with improved biopharmaceutical properties, such as are observed in cyclotides.

摘要

核磁共振波谱学(NMR)是一种用于确定分子结构、动态和相互作用的强大技术,其衍生信息在药物设计应用中可能很有用。本文简要概述了 NMR 在药物设计中的作用,并通过近年来我们实验室在富含二硫键的肽(包括环肽和 conotoxin)研究方面的例子来说明这一作用。环肽是来自植物的头尾环化蛋白,异常稳定,因此可用作稳定生物活性肽表位的模板以及抗 HIV 药物的潜在先导物。天然环肽以细胞膜为靶标,因此了解环肽-膜相互作用对于将环肽应用于药物设计应用中是有用的。本文描述了这些相互作用的 NMR 研究。conotoxin 是富含二硫键的肽,来自海洋圆锥蜗牛的毒液,具有药物应用价值,因为它们能够与多种离子通道、转运体和其他与疾病状态相关的受体位点强烈相互作用。对 conotoxin 进行化学重工程改造,使其具有环状骨架,已被用于改善其生物制药特性,如在环肽中观察到的特性。

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NMR and protein structure in drug design: application to cyclotides and conotoxins.NMR 和药物设计中的蛋白质结构:在环肽和 conotoxin 中的应用。
Eur Biophys J. 2011 Apr;40(4):359-70. doi: 10.1007/s00249-011-0672-9. Epub 2011 Feb 3.
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本文引用的文献

1
Backbone dynamics of cyclotide MCoTI-I free and complexed with trypsin.环肽MCoTI-I游离态及与胰蛋白酶复合态的主链动力学
Angew Chem Int Ed Engl. 2010 Sep 17;49(39):7030-4. doi: 10.1002/anie.201002906.
2
The cyclotide cycloviolacin O2 from Viola odorata has potent bactericidal activity against Gram-negative bacteria.堇菜科堇菜属植物紫花堇菜环六肽 Viola odorata 环六肽 O2 对革兰氏阴性菌具有很强的杀菌活性。
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Glycosylation of conotoxins.毒素的糖基化。
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Cyclotides, a novel ultrastable polypeptide scaffold for drug discovery.环肽,一种用于药物发现的新型超稳定多肽支架。
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用于治疗神经性疼痛的口服活性芋螺毒素的工程化。
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4
Lysine-scanning mutagenesis reveals an amendable face of the cyclotide kalata B1 for the optimization of nematocidal activity.赖氨酸扫描突变揭示了环肽 kalata B1 可修饰的一面,可用于优化杀虫活性。
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6
Drugs from slugs--past, present and future perspectives of omega-conotoxin research.从鼻涕虫到药物——ω-芋螺毒素研究的过去、现在和未来展望。
Chem Biol Interact. 2010 Jan 5;183(1):1-18. doi: 10.1016/j.cbi.2009.09.021.
7
Despite a conserved cystine knot motif, different cyclotides have different membrane binding modes.尽管存在保守的胱氨酸结基序,但不同的环肽具有不同的膜结合模式。
Biophys J. 2009 Sep 2;97(5):1471-81. doi: 10.1016/j.bpj.2009.06.032.
8
The biological activity of the prototypic cyclotide kalata b1 is modulated by the formation of multimeric pores.原型环肽kalata b1的生物活性受多聚体孔形成的调节。
J Biol Chem. 2009 Jul 31;284(31):20699-707. doi: 10.1074/jbc.M109.003384. Epub 2009 Jun 1.
9
Discovery, structure and biological activities of cyclotides.环肽的发现、结构与生物学活性
Adv Drug Deliv Rev. 2009 Sep 30;61(11):918-30. doi: 10.1016/j.addr.2009.05.003. Epub 2009 May 23.
10
Structural studies of conotoxins.芋螺毒素的结构研究。
IUBMB Life. 2009 Feb;61(2):144-50. doi: 10.1002/iub.158.