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大肠杆菌 MgsA 的结构与生化活性。

Structure and biochemical activities of Escherichia coli MgsA.

机构信息

Department of Biochemistry, University of Wisconsin, School of Medicine and Public Health, Madision, WI 53706, USA.

出版信息

J Biol Chem. 2011 Apr 8;286(14):12075-85. doi: 10.1074/jbc.M110.210187. Epub 2011 Feb 5.

DOI:10.1074/jbc.M110.210187
PMID:21297161
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3069411/
Abstract

Bacterial "maintenance of genome stability protein A" (MgsA) and related eukaryotic enzymes play important roles in cellular responses to stalled DNA replication processes. Sequence information identifies MgsA enzymes as members of the clamp loader clade of AAA+ proteins, but structural information defining the family has been limited. Here, the x-ray crystal structure of Escherichia coli MgsA is described, revealing a homotetrameric arrangement for the protein that distinguishes it from other clamp loader clade AAA+ proteins. Each MgsA protomer is composed of three elements as follows: ATP-binding and helical lid domains (conserved among AAA+ proteins) and a tetramerization domain. Although the tetramerization domains bury the greatest amount of surface area in the MgsA oligomer, each of the domains participates in oligomerization to form a highly intertwined quaternary structure. Phosphate is bound at each AAA+ ATP-binding site, but the active sites do not appear to be in a catalytically competent conformation due to displacement of Arg finger residues. E. coli MgsA is also shown to form a complex with the single-stranded DNA-binding protein through co-purification and biochemical studies. MgsA DNA-dependent ATPase activity is inhibited by single-stranded DNA-binding protein. Together, these structural and biochemical observations provide insights into the mechanisms of MgsA family AAA+ proteins.

摘要

细菌“基因组稳定蛋白 A”(MgsA)和相关的真核酶在细胞对停滞的 DNA 复制过程的反应中发挥重要作用。序列信息将 MgsA 酶鉴定为 AAA+ 蛋白的夹钳加载器类别的成员,但定义该家族的结构信息有限。本文描述了大肠杆菌 MgsA 的 X 射线晶体结构,揭示了该蛋白的四聚体排列,使其与其他夹钳加载器类 AAA+ 蛋白区分开来。每个 MgsA 原聚体由以下三个元素组成:ATP 结合和螺旋盖结构域(在 AAA+ 蛋白中保守)和四聚化结构域。尽管四聚化结构域在 MgsA 寡聚体中埋藏了最大的表面积,但每个结构域都参与寡聚化以形成高度交织的四级结构。磷酸盐结合在每个 AAA+ ATP 结合位点,但由于 Arg 手指残基的位移,活性位点似乎没有处于催化活性构象。通过共纯化和生化研究还表明,大肠杆菌 MgsA 还与单链 DNA 结合蛋白形成复合物。MgsA 的 DNA 依赖性 ATP 酶活性受到单链 DNA 结合蛋白的抑制。这些结构和生化观察结果共同为 MgsA 家族 AAA+ 蛋白的机制提供了深入的了解。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
The C-terminal domain of the bacterial SSB protein acts as a DNA maintenance hub at active chromosome replication forks.细菌 SSB 蛋白的 C 端结构域在活跃的染色体复制叉处充当 DNA 维护中心。
PLoS Genet. 2010 Dec 9;6(12):e1001238. doi: 10.1371/journal.pgen.1001238.
3
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.ConSurf 2010:计算蛋白质和核酸序列及结构的进化保守性。
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W529-33. doi: 10.1093/nar/gkq399. Epub 2010 May 16.
4
Regulation of single-stranded DNA binding by the C termini of Escherichia coli single-stranded DNA-binding (SSB) protein.大肠杆菌单链 DNA 结合蛋白(SSB)C 末端对单链 DNA 结合的调控。
J Biol Chem. 2010 May 28;285(22):17246-52. doi: 10.1074/jbc.M110.118273. Epub 2010 Apr 1.
5
Physical and functional interaction between WRNIP1 and RAD18.WRNIP1与RAD18之间的物理和功能相互作用。
Genes Genet Syst. 2009 Apr;84(2):171-8. doi: 10.1266/ggs.84.171.
6
Phaser crystallographic software.相位结晶学软件。
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
7
Identification of the SSB binding site on E. coli RecQ reveals a conserved surface for binding SSB's C terminus.大肠杆菌RecQ上SSB结合位点的鉴定揭示了一个结合SSB C末端的保守表面。
J Mol Biol. 2009 Feb 27;386(3):612-25. doi: 10.1016/j.jmb.2008.12.065. Epub 2009 Jan 3.
8
SSB as an organizer/mobilizer of genome maintenance complexes.单链结合蛋白作为基因组维持复合物的组织者/动员者。
Crit Rev Biochem Mol Biol. 2008 Sep-Oct;43(5):289-318. doi: 10.1080/10409230802341296.
9
Human Wrnip1 is localized in replication factories in a ubiquitin-binding zinc finger-dependent manner.人类Wrnip1以泛素结合锌指依赖的方式定位于复制工厂。
J Biol Chem. 2008 Dec 12;283(50):35173-85. doi: 10.1074/jbc.M803219200. Epub 2008 Oct 7.
10
Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I.大肠杆菌单链DNA结合蛋白对核酸外切酶I的刺激作用的结构基础
Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9169-74. doi: 10.1073/pnas.0800741105. Epub 2008 Jun 30.