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暗黑嗜皮菌模式菌株(G-20)的全基因组序列

Complete genome sequence of Geodermatophilus obscurus type strain (G-20).

作者信息

Ivanova Natalia, Sikorski Johannes, Jando Marlen, Munk Christine, Lapidus Alla, Glavina Del Rio Tijana, Copeland Alex, Tice Hope, Cheng Jan-Fang, Lucas Susan, Chen Feng, Nolan Matt, Bruce David, Goodwin Lynne, Pitluck Sam, Mavromatis Konstantinos, Mikhailova Natalia, Pati Amrita, Chen Amy, Palaniappan Krishna, Land Miriam, Hauser Loren, Chang Yun-Juan, Jeffries Cynthia D, Meincke Linda, Brettin Thomas, Detter John C, Rohde Manfred, Göker Markus, Bristow Jim, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter

出版信息

Stand Genomic Sci. 2010 Mar 30;2(2):158-67. doi: 10.4056/sigs.711311.

DOI:10.4056/sigs.711311
PMID:21304698
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3035280/
Abstract

Geodermatophilus obscurus Luedemann 1968 is the type species of the genus, which is the type genus of the family Geodermatophilaceae. G. obscurus is of interest as it has frequently been isolated from stressful environments such as rock varnish in deserts, and as it exhibits interesting phenotypes such as lytic capability of yeast cell walls, UV-C resistance, strong production of extracellular functional amyloid (FuBA) and manganese oxidation. This is the first completed genome sequence of the family Geodermatophilaceae. The 5,322,497 bp long genome with its 5,161 protein-coding and 58 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

暗褐嗜皮菌(Geodermatophilus obscurus)是吕德曼于1968年命名的该属模式种,而该属是嗜皮菌科的模式属。暗褐嗜皮菌备受关注,因为它经常从诸如沙漠中的岩石漆等恶劣环境中分离得到,并且表现出一些有趣的表型,如具有溶解酵母细胞壁的能力、抗UV-C、大量产生细胞外功能性淀粉样蛋白(FuBA)以及锰氧化能力。这是嗜皮菌科首个完成测序的基因组序列。这个长度为5,322,497 bp的基因组,包含5,161个蛋白质编码基因和58个RNA基因,是细菌和古菌基因组百科全书计划的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6912/3035280/e9defbb58c7a/sigs.711311-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6912/3035280/8fc0565f8546/sigs.711311-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6912/3035280/a1422a098bee/sigs.711311-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6912/3035280/e9defbb58c7a/sigs.711311-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6912/3035280/8fc0565f8546/sigs.711311-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6912/3035280/a1422a098bee/sigs.711311-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6912/3035280/e9defbb58c7a/sigs.711311-f3.jpg

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