Cryer Martin E, Frey Lewis
University of Utah, Salt Lake City, UT.
Summit Transl Bioinform. 2009 Mar 1;2009:26-30.
With the increasing age and cost of operation of the existing NCI SEER platform core technologies, such essential resources in the fight against cancer as these will eventually have to be migrated to Grid based systems. In order to model this migration, a simulation is proposed based upon an agent modeling technology. This modeling technique allows for simulation of complex and distributed services provided by a large scale Grid computing platform such as the caBIG(™) project's caGRID. In order to investigate such a migration to a Grid based platform technology, this paper proposes using agent-based modeling simulations to predict the performance of current and Grid configurations of the NCI SEER system integrated with the existing translational opportunities afforded by caGRID. The model illustrates how the use of Grid technology can potentially improve system response time as systems under test are scaled. In modeling SEER nodes accessing multiple registry silos, we show that the performance of SEER applications re-implemented in a Grid native manner exhibits a nearly constant user response time with increasing numbers of distributed registry silos, compared with the current application architecture which exhibits a linear increase in response time for increasing numbers of silos.
随着现有美国国立癌症研究所监测、流行病学和最终结果(NCI SEER)平台核心技术的使用年限增加和运营成本上升,这些对抗癌症的关键资源最终将不得不迁移到基于网格的系统中。为了模拟这种迁移,提出了一种基于代理建模技术的模拟方法。这种建模技术能够模拟大规模网格计算平台(如caBIG(™)项目的caGRID)所提供的复杂分布式服务。为了研究向基于网格的平台技术的这种迁移,本文建议使用基于代理的建模模拟来预测与caGRID提供的现有转化机会集成后的NCI SEER系统当前配置和基于网格配置的性能。该模型说明了随着被测系统规模的扩大,使用网格技术如何能够潜在地提高系统响应时间。在对访问多个注册库孤岛的SEER节点进行建模时,我们表明,与当前应用程序架构相比,以原生网格方式重新实现的SEER应用程序的性能在分布式注册库孤岛数量增加时表现出几乎恒定的用户响应时间,而当前应用程序架构在孤岛数量增加时响应时间呈线性增长。