Theoretical and Computational Biophysics, Department of Theoretical Physics and Swedish e-Science Research Center, Royal Institute of Technology, Stockholm, Sweden.
Biophys J. 2011 Mar 16;100(6):1446-54. doi: 10.1016/j.bpj.2011.02.003.
The activation of voltage-gated ion channels is controlled by the S4 helix, with arginines every third residue. The x-ray structures are believed to reflect an open-inactivated state, and models propose combinations of translation, rotation, and tilt to reach the resting state. Recently, experiments and simulations have independently observed occurrence of 3(10)-helix in S4. This suggests S4 might make a transition from α- to 3(10)-helix in the gating process. Here, we show 3(10)-helix structure between Q1 and R3 in the S4 segment of a voltage sensor appears to facilitate the early stage of the motion toward a down state. We use multiple microsecond-steered molecular simulations to calculate the work required for translating S4 both as α-helix and transformed to 3(10)-helix. The barrier appears to be caused by salt-bridge reformation simultaneous to R4 passing the F233 hydrophobic lock, and it is almost a factor-two lower with 3(10)-helix. The latter facilitates translation because R2/R3 line up to face E183/E226, which reduces the requirement to rotate S4. This is also reflected in a lower root mean-square deviation distortion of the rest of the voltage sensor. This supports the 3(10) hypothesis, and could explain some of the differences between the open-inactivated- versus activated-states.
电压门控离子通道的激活受 S4 螺旋控制,每隔三个残基就有一个精氨酸。X 射线结构被认为反映了开放失活状态,而模型提出了翻译、旋转和倾斜的组合来达到静息状态。最近,实验和模拟独立观察到 S4 中 3(10)-螺旋的发生。这表明 S4 在门控过程中可能从 α-螺旋过渡到 3(10)-螺旋。在这里,我们展示了电压传感器 S4 段中 Q1 和 R3 之间的 3(10)-螺旋结构似乎促进了向向下状态运动的早期阶段。我们使用多个微秒引导的分子模拟来计算将 S4 从 α-螺旋转换为 3(10)-螺旋所需的功。该障碍似乎是由于盐桥重建与 R4 通过 F233 疏水性锁同时发生引起的,而 3(10)-螺旋的障碍低了几乎两倍。后者促进了翻译,因为 R2/R3 排列成面对 E183/E226,这减少了对 S4 旋转的要求。这也反映在电压传感器其余部分的均方根偏差扭曲较小。这支持了 3(10)假说,并可以解释开放失活状态与激活状态之间的一些差异。